Rice gene details
Searching for LOC_Os01g61940 [white-brown complex homolog protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g61940.1 750 141 331 PF00005.19 ABC_tran
2 LOC_Os01g61940.1 750 443 653 PF01061.16 ABC2_membrane
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -1
N22 Root FC
  -104
IR64 Flag-leaf FC
  -2
IR64InfloresenceFC
  1
IR64 Root FC
  -7

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016787 hydrolase activity (RGAP)
2 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0009409 response to cold  
3 GO:0009735 response to cytokinin stimulus  
4 GO:0009737 response to abscisic acid stimulus  
5 GO:0009739 response to gibberellin stimulus  
6 GO:0009741 response to brassinosteroid stimulus  
7 GO:0009753 response to jasmonic acid stimulus  
8 GO:0006810 transport (RGAP)
9 GO:0009987 cellular process (RGAP)
10 GO:0009056 catabolic process (RGAP)
11 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (-)
2 EO:0007048 sodium chloride regimen (+)
3 EO:0007069 gibberellic acid regimen (+)
4 EO:0007070 indole acetic acid regimen (+)
5 EO:0007080 jasmonic acid regimen (+)
6 EO:0007105 abscisic acid regimen (+)
7 EO:0007173 warm/hot temperature regimen (+)
8 EO:0007187 salicylic acid regimen (+)
9 EO:0007290 kinetin regimen (+)
10 EO:0007332 cold air temperature regimen (+)
11 MCE:1000023 benzyl aminopurine (BPA) (+)
12 MCE:1000044 mannitol (+)
13 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
14 MCE:1000063 epibrassinolide (+)
15 MCE:1000195 hypoxic environment (+)
16 MCE:1000330 nitrogen flushing (-)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAS7 spikelet density
2 CQAS6 spikelet number
3 CQAS5 panicle number
4 CQAS4 panicle length
5 CQAS3 days to maturity
6 AQEE013 head rice
7 AQED026 panicle number
8 AQFE057 seed set percent
9 AQDX003 osmotic adjustment capacity
10 CQB36 1000-grain weight
11 CQB35 1000-grain weight
12 CQB2 1000-grain weight
13 CQB1 days to heading
14 AQED020 panicle length
15 AQED019 panicle length
16 AQEP001 seedling vigor
17 CQAQ3 plant height
18 CQAX15 plant height
19 CQAX1 plant height
20 CQAV1 osmotic adjustment capacity
21 AQFE094 plant height
22 AQFE093 plant height
23 AQCN022 rice yellow mottle virus resistance
24 AQCN021 rice yellow mottle virus resistance
25 AQCN020 rice yellow mottle virus resistance
26 AQCN019 rice yellow mottle virus resistance
27 AQCN018 rice yellow mottle virus resistance
28 AQCN017 rice yellow mottle virus resistance
29 AQCN016 rice yellow mottle virus resistance
30 AQCN002 tiller number
31 AQCN003 days to heading
32 AQCN001 plant height
33 AQEP008 seedling vigor
34 AQEP007 seedling vigor
35 AQEA012 plant height
36 AQEA013 plant height
37 AQEA011 plant height
38 AQEA010 plant height
39 AQEA009 plant height
40 AQEA008 plant height
41 AQEA007 plant height
42 AQEA006 plant height
43 AQEA005 plant height
44 AQEA004 plant height
45 AQEA003 plant height
46 AQEA002 plant height
47 AQEA001 plant height
48 AQDV054 1000-seed weight
49 AQDV045 panicle length
50 AQDV041 plant height
51 AQDV038 panicle exsertion
52 AQDV015 harvest index
53 AQDV026 panicle number
54 AQDV008 days to heading
55 AQAS002 plant height
56 DQF9 penetrated root thickness
57 DQE46 relative water content
58 DQE45 relative water content
59 DQE13 leaf rolling
60 DQE12 leaf rolling
61 CQV6 plant height
62 CQV5 plant height
63 CQV3 plant height
64 CQV4 plant height
65 CQV19 plant height
66 CQV15 plant height
67 CQV12 plant height
68 CQV1 plant height
69 CQQ6 root weight
70 CQQ33 plant height
71 CQQ32 root weight
72 CQQ13 root dry weight to tiller number ratio
73 CQAI6 plant height
74 CQAI3 plant height
75 CQAB9 plant height
76 CQAI1 plant height
77 CQAB8 plant height
78 CQAB7 plant height
79 CQAB6 plant height
80 CQAB5 plant height
81 CQAB4 plant height
82 CQAB11 plant height
83 CQAB10 plant height
84 AQFE051 panicle length
85 AQFE050 panicle length
86 AQFE049 panicle length
87 AQFE006 days to heading
88 AQFE005 days to heading
89 AQDH001 seed length
90 AQBE049 tiller number
91 AQBE048 tiller number
92 AQBE047 tiller number
93 AQBE046 tiller number
94 AQBE012 tiller number
95 AQBE011 tiller number
96 AQBE010 tiller number
97 AQBE009 tiller number
98 AQBE007 tiller number
99 AQBE008 tiller number
100 AQBE006 tiller number
101 AQBE005 tiller number
102 AQBC076 leaf length
103 AQBE004 tiller number
104 AQBC075 leaf length
105 AQBC037 tiller number
106 AQBC074 leaf length
107 AQBC036 tiller number
108 AQBC025 panicle number
109 AQBC035 tiller number
110 AQBC024 panicle number
111 AQBC005 plant height
112 AQBC023 panicle number
113 AQBC004 plant height
114 AQBC003 plant height
115 AQBC002 plant height
116 AQBC001 plant height
117 AQBB038 plant height
118 AQBB037 plant height
119 AQBB036 plant height
120 AQBB035 plant height
121 AQBB034 plant height
122 AQBB033 plant height
123 AQBB032 plant height
124 AQBB031 plant height
125 AQBB030 plant height
126 AQBB029 plant height
127 AQBB028 plant height
128 AQBB027 plant height
129 AQBB026 plant height
130 AQBB025 plant height
131 AQBB024 plant height
132 AQBB023 plant height
133 AQBB022 plant height
134 AQBB021 plant height
135 AQBB020 plant height
136 AQBB019 plant height
137 AQBB018 plant height
138 AQBB017 plant height
139 AQBB015 plant height
140 AQBB016 plant height
141 AQBB014 plant height
142 AQBB012 plant height
143 AQBB013 plant height
144 AQBB011 plant height
145 AQBB010 plant height
146 AQBB009 plant height
147 AQBB008 plant height
148 AQBB007 plant height
149 AQBB006 plant height
150 AQBB005 plant height
151 AQBB004 plant height
152 AQBB003 plant height
153 AQBB002 plant height
154 AQBB001 plant height
155 CQZ2 plant height
156 AQEJ027 leaf width
157 AQEJ025 leaf width
158 AQAK022 spikelet fertility
159 AQDQ008 plant height
160 CQP2 culm length
161 CQP1 cold tolerance
162 AQY005 plant height
163 AQY001 plant height
164 AQQ011 tiller number
165 AQQ005 grain yield
166 AQQ001 grain yield
167 AQCY001 grain yield
168 AQAI019 large vascular bundle number
169 AQAF016 blast disease resistance
170 AQAF015 blast disease resistance
171 AQAB061 large vascular bundle number
172 AQAB021 large vascular bundle number
173 AQQ024 seed weight
174 AQGI254 total biomass yield
175 AQGI222 total biomass yield
176 AQGI038 root dry weight
177 AQGI009 root dry weight
178 AQEX015 biomass yield
179 AQCB029 spikelets per panicle length
180 AQCB014 seed set percent
181 AQCB002 spikelet number
182 AQAI069 1000-grain weight
183 AQAI064 large vascular bundle number to spikelet number ratio
184 AQAG042 1000-seed weight
185 AQAG030 1000-seed weight
186 AQAG004 grain yield
187 AQAF017 blast disease resistance
188 AQAE017 seed weight
189 AQAC047 seed weight
190 AQAC028 root length
191 AQAB065 spikelet number
192 AQAB054 spikelet number
193 AQAB042 secondary branch
194 AQAB019 spikelet number
195 AQAB015 spikelet number
196 AQAB008 secondary branch
197 AQJ011 grain yield
198 AQJ008 spikelet sterility
199 AQJ002 plant height
200 AQG017 biomass yield
201 AQG009 panicle number
202 AQG007 panicle exsertion
203 AQG005 panicle length
204 AQG001 plant height
205 AQFF075 plant height
206 AQGC035 penetrated root length
207 AQGC022 penetrated root thickness
208 AQEM008 salt sensitivity
209 AQEM001 salt sensitivity
210 AQFR044 seedling vigor
211 AQFR014 seedling vigor
212 AQGI118 biomass yield
213 AQAI026 leaf area to spikelet number ratio
214 AQAF014 blast disease resistance
215 AQAF013 blast disease resistance
216 AQAF012 blast disease resistance
217 AQAE004 leaf length
218 AQEE017 cracked grain percentage
219 AQO022 root to shoot ratio
220 AQO001 biomass yield
221 AQGS023 spikelet fertility
222 AQHF019 leaf senescence
223 AQHF014 chlorophyll content
224 CQAX30 plant height
225 AQJ004 panicle number
226 CQS2 seminal root length
227 AQCF026 grain yield
228 AQCF025 spikelet fertility
229 AQT001 culm length
230 AQFU001 brown rice ratio
231 CQX5 culm length
232 CQX22 internode length
233 CQX17 internode length
234 AQF001 grain shattering
235 AQDY026 culm length
236 AQDY024 culm length
237 AQDY025 culm length
238 AQDY023 culm length
239 AQDY022 culm length
240 AQDY021 culm length
241 AQBV009 leaf angle
242 AQCU132 leaf length
243 AQAQ008 blast disease resistance
244 CQAR4 seed number
245 CQAR2 spikelet number
246 CQAR3 spikelet density
247 CQAR1 plant height
248 CQAR6 spikelet density
249 CQAR5 spikelet number
250 CQN1 nadh-dependent glutamate synthase content
251 CQN4 soluble protein content
252 AQCS004 ultraviolet-b resistance
253 AQED013 plant height
254 AQED012 plant height
255 CQAE5 plant height
256 CQAE24 grain yield per plant
257 CQAE20 1000-grain weight
258 CQAE19 1000-grain weight
259 CQAE15 grain number
260 AQBK040 seed number
261 CQC1 plant height
262 AQBK003 plant height
263 AQCR001 grain yield
264 AQCS001 ultraviolet-b resistance
265 CQG1 adaxial stomatal frequency
266 CQX6 culm length
267 CQX21 internode length
268 CQN51 spikelet number
269 CQN5 soluble protein content
270 CQN43 panicle weight
271 CQN26 leaf senescence
272 CQN49 spikelet number
273 CQN3 soluble protein content
274 CQE3 plant height
275 CQE2 plant height
276 CQE6 specific leaf area
277 CQF2 soluble protein content
278 AQCW010 H2O2 content
279 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000559 long adventitious root (+)
2 MCP:1000560 short adventitious root (-)
3 PO:0005427 sclerenchyma (+)
4 PO:0005772 exodermis (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Shiono Katsuhiro; Yamauchi Takaki; Yamazaki So; Mohanty Bijayalaxmi; Malik Al Imran; Nagamura Yoshiaki; Nishizawa Naoko K; Tsutsumi Nobuhiro; Colmer Timothy D; Nakazono Mikio; Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa). Journal of experimental botany 2014:65
PMID [24913626]


Matsuda Shuichi; Funabiki Atsushi; Furukawa Kaoru; Komori Nozomi; Koike Masanori; Tokuji Yoshihiko; Takamure Itsuro; Kato Kiyoaki; Genome-wide analysis and expression profiling of half-size ABC protein subgroup G in rice in response to abiotic stress and phytohormone treatments. Molecular genetics and genomics 2012:287
PMID [22996334]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India