Rice gene details Home Browse Search Contact Us Feedback Links Searching for LOC_Os01g61940 [white-brown complex homolog protein, putative, expressed ] Basic information [Pfam DB] Graphical representation of the protein domains S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name 1 LOC_Os01g61940.1 750 141 331 PF00005.19 ABC_tran 2 LOC_Os01g61940.1 750 443 653 PF01061.16 ABC2_membrane   The basic information is from RGAP and Pfam/InterPro databases Gene model (download) IR64 N22 Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change] N22 Flag-leaf FC   2 N22InfloresenceFC   -1 N22 Root FC   -104 IR64 Flag-leaf FC   -2 IR64InfloresenceFC   1 IR64 Root FC   -7 Functional details Molecular Function S. No. GO Id GO Description 1 GO:0016787 hydrolase activity (RGAP) 2 GO:0005215 transporter activity (RGAP) Biological process S. No. GO Id GO Description 1 GO:0009408 response to heat   2 GO:0009409 response to cold   3 GO:0009735 response to cytokinin stimulus   4 GO:0009737 response to abscisic acid stimulus   5 GO:0009739 response to gibberellin stimulus   6 GO:0009741 response to brassinosteroid stimulus   7 GO:0009753 response to jasmonic acid stimulus   8 GO:0006810 transport (RGAP) 9 GO:0009987 cellular process (RGAP) 10 GO:0009056 catabolic process (RGAP) 11 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP) Cellular component S. No. GO Id GO Description 1 GO:0016020 membrane (RGAP) Environment details S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity 1 EO:0007024 aerobic environment (-) 2 EO:0007048 sodium chloride regimen (+) 3 EO:0007069 gibberellic acid regimen (+) 4 EO:0007070 indole acetic acid regimen (+) 5 EO:0007080 jasmonic acid regimen (+) 6 EO:0007105 abscisic acid regimen (+) 7 EO:0007173 warm/hot temperature regimen (+) 8 EO:0007187 salicylic acid regimen (+) 9 EO:0007290 kinetin regimen (+) 10 EO:0007332 cold air temperature regimen (+) 11 MCE:1000023 benzyl aminopurine (BPA) (+) 12 MCE:1000044 mannitol (+) 13 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+) 14 MCE:1000063 epibrassinolide (+) 15 MCE:1000195 hypoxic environment (+) 16 MCE:1000330 nitrogen flushing (-) Metabolic Pathway details Not found QTL details S. No. QTL Id QTL Associated Trait 1 CQAS7 spikelet density 2 CQAS6 spikelet number 3 CQAS5 panicle number 4 CQAS4 panicle length 5 CQAS3 days to maturity 6 AQEE013 head rice 7 AQED026 panicle number 8 AQFE057 seed set percent 9 AQDX003 osmotic adjustment capacity 10 CQB36 1000-grain weight 11 CQB35 1000-grain weight 12 CQB2 1000-grain weight 13 CQB1 days to heading 14 AQED020 panicle length 15 AQED019 panicle length 16 AQEP001 seedling vigor 17 CQAQ3 plant height 18 CQAX15 plant height 19 CQAX1 plant height 20 CQAV1 osmotic adjustment capacity 21 AQFE094 plant height 22 AQFE093 plant height 23 AQCN022 rice yellow mottle virus resistance 24 AQCN021 rice yellow mottle virus resistance 25 AQCN020 rice yellow mottle virus resistance 26 AQCN019 rice yellow mottle virus resistance 27 AQCN018 rice yellow mottle virus resistance 28 AQCN017 rice yellow mottle virus resistance 29 AQCN016 rice yellow mottle virus resistance 30 AQCN002 tiller number 31 AQCN003 days to heading 32 AQCN001 plant height 33 AQEP008 seedling vigor 34 AQEP007 seedling vigor 35 AQEA012 plant height 36 AQEA013 plant height 37 AQEA011 plant height 38 AQEA010 plant height 39 AQEA009 plant height 40 AQEA008 plant height 41 AQEA007 plant height 42 AQEA006 plant height 43 AQEA005 plant height 44 AQEA004 plant height 45 AQEA003 plant height 46 AQEA002 plant height 47 AQEA001 plant height 48 AQDV054 1000-seed weight 49 AQDV045 panicle length 50 AQDV041 plant height 51 AQDV038 panicle exsertion 52 AQDV015 harvest index 53 AQDV026 panicle number 54 AQDV008 days to heading 55 AQAS002 plant height 56 DQF9 penetrated root thickness 57 DQE46 relative water content 58 DQE45 relative water content 59 DQE13 leaf rolling 60 DQE12 leaf rolling 61 CQV6 plant height 62 CQV5 plant height 63 CQV3 plant height 64 CQV4 plant height 65 CQV19 plant height 66 CQV15 plant height 67 CQV12 plant height 68 CQV1 plant height 69 CQQ6 root weight 70 CQQ33 plant height 71 CQQ32 root weight 72 CQQ13 root dry weight to tiller number ratio 73 CQAI6 plant height 74 CQAI3 plant height 75 CQAB9 plant height 76 CQAI1 plant height 77 CQAB8 plant height 78 CQAB7 plant height 79 CQAB6 plant height 80 CQAB5 plant height 81 CQAB4 plant height 82 CQAB11 plant height 83 CQAB10 plant height 84 AQFE051 panicle length 85 AQFE050 panicle length 86 AQFE049 panicle length 87 AQFE006 days to heading 88 AQFE005 days to heading 89 AQDH001 seed length 90 AQBE049 tiller number 91 AQBE048 tiller number 92 AQBE047 tiller number 93 AQBE046 tiller number 94 AQBE012 tiller number 95 AQBE011 tiller number 96 AQBE010 tiller number 97 AQBE009 tiller number 98 AQBE007 tiller number 99 AQBE008 tiller number 100 AQBE006 tiller number 101 AQBE005 tiller number 102 AQBC076 leaf length 103 AQBE004 tiller number 104 AQBC075 leaf length 105 AQBC037 tiller number 106 AQBC074 leaf length 107 AQBC036 tiller number 108 AQBC025 panicle number 109 AQBC035 tiller number 110 AQBC024 panicle number 111 AQBC005 plant height 112 AQBC023 panicle number 113 AQBC004 plant height 114 AQBC003 plant height 115 AQBC002 plant height 116 AQBC001 plant height 117 AQBB038 plant height 118 AQBB037 plant height 119 AQBB036 plant height 120 AQBB035 plant height 121 AQBB034 plant height 122 AQBB033 plant height 123 AQBB032 plant height 124 AQBB031 plant height 125 AQBB030 plant height 126 AQBB029 plant height 127 AQBB028 plant height 128 AQBB027 plant height 129 AQBB026 plant height 130 AQBB025 plant height 131 AQBB024 plant height 132 AQBB023 plant height 133 AQBB022 plant height 134 AQBB021 plant height 135 AQBB020 plant height 136 AQBB019 plant height 137 AQBB018 plant height 138 AQBB017 plant height 139 AQBB015 plant height 140 AQBB016 plant height 141 AQBB014 plant height 142 AQBB012 plant height 143 AQBB013 plant height 144 AQBB011 plant height 145 AQBB010 plant height 146 AQBB009 plant height 147 AQBB008 plant height 148 AQBB007 plant height 149 AQBB006 plant height 150 AQBB005 plant height 151 AQBB004 plant height 152 AQBB003 plant height 153 AQBB002 plant height 154 AQBB001 plant height 155 CQZ2 plant height 156 AQEJ027 leaf width 157 AQEJ025 leaf width 158 AQAK022 spikelet fertility 159 AQDQ008 plant height 160 CQP2 culm length 161 CQP1 cold tolerance 162 AQY005 plant height 163 AQY001 plant height 164 AQQ011 tiller number 165 AQQ005 grain yield 166 AQQ001 grain yield 167 AQCY001 grain yield 168 AQAI019 large vascular bundle number 169 AQAF016 blast disease resistance 170 AQAF015 blast disease resistance 171 AQAB061 large vascular bundle number 172 AQAB021 large vascular bundle number 173 AQQ024 seed weight 174 AQGI254 total biomass yield 175 AQGI222 total biomass yield 176 AQGI038 root dry weight 177 AQGI009 root dry weight 178 AQEX015 biomass yield 179 AQCB029 spikelets per panicle length 180 AQCB014 seed set percent 181 AQCB002 spikelet number 182 AQAI069 1000-grain weight 183 AQAI064 large vascular bundle number to spikelet number ratio 184 AQAG042 1000-seed weight 185 AQAG030 1000-seed weight 186 AQAG004 grain yield 187 AQAF017 blast disease resistance 188 AQAE017 seed weight 189 AQAC047 seed weight 190 AQAC028 root length 191 AQAB065 spikelet number 192 AQAB054 spikelet number 193 AQAB042 secondary branch 194 AQAB019 spikelet number 195 AQAB015 spikelet number 196 AQAB008 secondary branch 197 AQJ011 grain yield 198 AQJ008 spikelet sterility 199 AQJ002 plant height 200 AQG017 biomass yield 201 AQG009 panicle number 202 AQG007 panicle exsertion 203 AQG005 panicle length 204 AQG001 plant height 205 AQFF075 plant height 206 AQGC035 penetrated root length 207 AQGC022 penetrated root thickness 208 AQEM008 salt sensitivity 209 AQEM001 salt sensitivity 210 AQFR044 seedling vigor 211 AQFR014 seedling vigor 212 AQGI118 biomass yield 213 AQAI026 leaf area to spikelet number ratio 214 AQAF014 blast disease resistance 215 AQAF013 blast disease resistance 216 AQAF012 blast disease resistance 217 AQAE004 leaf length 218 AQEE017 cracked grain percentage 219 AQO022 root to shoot ratio 220 AQO001 biomass yield 221 AQGS023 spikelet fertility 222 AQHF019 leaf senescence 223 AQHF014 chlorophyll content 224 CQAX30 plant height 225 AQJ004 panicle number 226 CQS2 seminal root length 227 AQCF026 grain yield 228 AQCF025 spikelet fertility 229 AQT001 culm length 230 AQFU001 brown rice ratio 231 CQX5 culm length 232 CQX22 internode length 233 CQX17 internode length 234 AQF001 grain shattering 235 AQDY026 culm length 236 AQDY024 culm length 237 AQDY025 culm length 238 AQDY023 culm length 239 AQDY022 culm length 240 AQDY021 culm length 241 AQBV009 leaf angle 242 AQCU132 leaf length 243 AQAQ008 blast disease resistance 244 CQAR4 seed number 245 CQAR2 spikelet number 246 CQAR3 spikelet density 247 CQAR1 plant height 248 CQAR6 spikelet density 249 CQAR5 spikelet number 250 CQN1 nadh-dependent glutamate synthase content 251 CQN4 soluble protein content 252 AQCS004 ultraviolet-b resistance 253 AQED013 plant height 254 AQED012 plant height 255 CQAE5 plant height 256 CQAE24 grain yield per plant 257 CQAE20 1000-grain weight 258 CQAE19 1000-grain weight 259 CQAE15 grain number 260 AQBK040 seed number 261 CQC1 plant height 262 AQBK003 plant height 263 AQCR001 grain yield 264 AQCS001 ultraviolet-b resistance 265 CQG1 adaxial stomatal frequency 266 CQX6 culm length 267 CQX21 internode length 268 CQN51 spikelet number 269 CQN5 soluble protein content 270 CQN43 panicle weight 271 CQN26 leaf senescence 272 CQN49 spikelet number 273 CQN3 soluble protein content 274 CQE3 plant height 275 CQE2 plant height 276 CQE6 specific leaf area 277 CQF2 soluble protein content 278 AQCW010 H2O2 content 279 AQCW002 chlorophyll content Plant developmental stage / tissue details Plant development stage S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity 1 MCP:1000518 seedling development stage (+) 2 PO:0007106 LP.03 three leaves visible (+) Plant tissue/organ S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity 1 MCP:1000559 long adventitious root (+) 2 MCP:1000560 short adventitious root (-) 3 PO:0005427 sclerenchyma (+) 4 PO:0005772 exodermis (+) 5 PO:0009005 root (+) 6 PO:0009006 shoot system (+) Others S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity Not found Trait details Not found Physical interaction details Interaction type: protein-protein Not found Interaction type: protein-DNA Not found Related publications [Sorted by year] 1  Shiono Katsuhiro; Yamauchi Takaki; Yamazaki So; Mohanty Bijayalaxmi; Malik Al Imran; Nagamura Yoshiaki; Nishizawa Naoko K; Tsutsumi Nobuhiro; Colmer Timothy D; Nakazono Mikio; Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa). Journal of experimental botany 2014:65 PMID [24913626] 2  Matsuda Shuichi; Funabiki Atsushi; Furukawa Kaoru; Komori Nozomi; Koike Masanori; Tokuji Yoshihiko; Takamure Itsuro; Kato Kiyoaki; Genome-wide analysis and expression profiling of half-size ABC protein subgroup G in rice in response to abiotic stress and phytohormone treatments. Molecular genetics and genomics 2012:287 PMID [22996334] Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India