Rice gene details
Searching for LOC_Os01g63770 [transmembrane amino acid transporter protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g63770.1 493 52 446 PF01490.10 Aa_trans
2 LOC_Os01g63770.2 283 1 236 PF01490.10 Aa_trans
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -3
N22 Root FC
  2
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005488 binding (RGAP)
2 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009414 response to water deprivation  
2 GO:0009651 response to salt stress  
3 GO:0009725 response to hormone stimulus  
4 GO:0009733 response to auxin stimulus  
5 GO:0009735 response to cytokinin stimulus  
6 GO:0009739 response to gibberellin stimulus  
7 GO:0009719 response to endogenous stimulus (RGAP)
8 GO:0009628 response to abiotic stimulus (RGAP)
9 GO:0009606 tropism (RGAP)
10 GO:0009653 anatomical structure morphogenesis (RGAP)
11 GO:0009791 post-embryonic development (RGAP)
12 GO:0006810 transport (RGAP)
13 GO:0009987 cellular process (RGAP)
14 GO:0009607 response to biotic stimulus (RGAP)
15 GO:0030154 cell differentiation (RGAP)
16 GO:0007275 multicellular organismal development (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0005886 plasma membrane (RGAP)
3 GO:0005768 endosome (RGAP)
4 GO:0005623 cell (RGAP)
5 GO:0005794 Golgi apparatus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007070 indole acetic acid regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007174 cold temperature regimen (+)
4 EO:0007180 2,4-dichlorophenoxyacetic acid (+)
5 EO:0007185 salt regimen (+)
6 EO:0007204 1-naphthaleneacetic acid (+)
7 EO:0007404 drought environment (+)
8 MCE:1000023 benzyl aminopurine (BPA) (+)
9 MCE:1000288 GA3 gibberellin (+)
10 MCE:1000344 2-naphthoxyacetic acid (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQFE103 grain shattering
2 AQED042 1000-seed weight
3 AQED041 1000-seed weight
4 EQA0001 seed dormancy
5 AQFJ039 panicle length
6 AQFJ035 1000-seed weight
7 AQFF073 plant height
8 AQFF077 plant height
9 AQFF071 plant height
10 AQFF068 plant height
11 AQFF064 panicle number
12 AQFF059 panicle number
13 AQFF054 panicle number
14 AQFF049 panicle number
15 AQFF045 panicle number
16 AQEI044 leaf senescence
17 AQEL008 root number
18 CQAS7 spikelet density
19 CQAS6 spikelet number
20 CQAS5 panicle number
21 CQAS4 panicle length
22 CQAS3 days to maturity
23 AQEE013 head rice
24 AQED026 panicle number
25 CQB36 1000-grain weight
26 CQB35 1000-grain weight
27 CQB2 1000-grain weight
28 CQB1 days to heading
29 AQED020 panicle length
30 AQED019 panicle length
31 AQEP001 seedling vigor
32 CQAQ3 plant height
33 CQAX15 plant height
34 CQAX1 plant height
35 CQAV1 osmotic adjustment capacity
36 AQFE094 plant height
37 AQFE093 plant height
38 AQCN022 rice yellow mottle virus resistance
39 AQCN021 rice yellow mottle virus resistance
40 AQCN020 rice yellow mottle virus resistance
41 AQCN019 rice yellow mottle virus resistance
42 AQCN018 rice yellow mottle virus resistance
43 AQCN017 rice yellow mottle virus resistance
44 AQCN016 rice yellow mottle virus resistance
45 AQCN002 tiller number
46 AQCN003 days to heading
47 AQCN001 plant height
48 AQEP008 seedling vigor
49 AQEP007 seedling vigor
50 AQEA012 plant height
51 AQEA013 plant height
52 AQEA011 plant height
53 AQEA010 plant height
54 AQEA009 plant height
55 AQEA008 plant height
56 AQEA007 plant height
57 AQEA006 plant height
58 AQEA005 plant height
59 AQEA004 plant height
60 AQEA003 plant height
61 AQEA002 plant height
62 AQEA001 plant height
63 AQDV054 1000-seed weight
64 AQDV045 panicle length
65 AQDV041 plant height
66 AQDV038 panicle exsertion
67 AQDV015 harvest index
68 AQDV026 panicle number
69 AQDV008 days to heading
70 AQAS002 plant height
71 DQF9 penetrated root thickness
72 DQE46 relative water content
73 DQE45 relative water content
74 DQE13 leaf rolling
75 DQE12 leaf rolling
76 CQV6 plant height
77 CQV5 plant height
78 CQV3 plant height
79 CQV4 plant height
80 CQV19 plant height
81 CQV15 plant height
82 CQV12 plant height
83 CQV1 plant height
84 CQQ6 root weight
85 CQQ33 plant height
86 CQQ32 root weight
87 CQQ13 root dry weight to tiller number ratio
88 CQAI6 plant height
89 CQAI3 plant height
90 CQAB9 plant height
91 CQAI1 plant height
92 CQAB8 plant height
93 CQAB7 plant height
94 CQAB6 plant height
95 CQAB5 plant height
96 CQAB4 plant height
97 CQAB11 plant height
98 CQAB10 plant height
99 AQFE051 panicle length
100 AQFE050 panicle length
101 AQFE049 panicle length
102 AQFE006 days to heading
103 AQFE005 days to heading
104 AQDH001 seed length
105 AQBE049 tiller number
106 AQBE048 tiller number
107 AQBE047 tiller number
108 AQBE046 tiller number
109 AQBE012 tiller number
110 AQBE011 tiller number
111 AQBE010 tiller number
112 AQBE009 tiller number
113 AQBE007 tiller number
114 AQBE008 tiller number
115 AQBE006 tiller number
116 AQBE005 tiller number
117 AQBC076 leaf length
118 AQBE004 tiller number
119 AQBC075 leaf length
120 AQBC037 tiller number
121 AQBC074 leaf length
122 AQBC036 tiller number
123 AQBC025 panicle number
124 AQBC035 tiller number
125 AQBC024 panicle number
126 AQBC005 plant height
127 AQBC023 panicle number
128 AQBC004 plant height
129 AQBC003 plant height
130 AQBC002 plant height
131 AQBC001 plant height
132 AQBB038 plant height
133 AQBB037 plant height
134 AQBB036 plant height
135 AQBB035 plant height
136 AQBB034 plant height
137 AQBB033 plant height
138 AQBB032 plant height
139 AQBB031 plant height
140 AQBB030 plant height
141 AQBB029 plant height
142 AQBB028 plant height
143 AQBB027 plant height
144 AQBB026 plant height
145 AQBB025 plant height
146 AQBB024 plant height
147 AQBB023 plant height
148 AQBB022 plant height
149 AQBB021 plant height
150 AQBB020 plant height
151 AQBB019 plant height
152 AQBB018 plant height
153 AQBB017 plant height
154 AQBB015 plant height
155 AQBB016 plant height
156 AQBB014 plant height
157 AQBB012 plant height
158 AQBB013 plant height
159 AQBB011 plant height
160 AQBB010 plant height
161 AQBB009 plant height
162 AQBB008 plant height
163 AQBB007 plant height
164 AQBB006 plant height
165 AQBB005 plant height
166 AQBB004 plant height
167 AQBB003 plant height
168 AQBB002 plant height
169 AQBB001 plant height
170 CQZ2 plant height
171 AQEJ027 leaf width
172 AQEJ025 leaf width
173 AQAK022 spikelet fertility
174 AQDQ008 plant height
175 CQP2 culm length
176 CQP1 cold tolerance
177 AQY005 plant height
178 AQY001 plant height
179 AQQ011 tiller number
180 AQQ005 grain yield
181 AQQ001 grain yield
182 AQCY001 grain yield
183 AQAI019 large vascular bundle number
184 AQAF016 blast disease resistance
185 AQAF015 blast disease resistance
186 AQAB061 large vascular bundle number
187 AQAB021 large vascular bundle number
188 AQQ024 seed weight
189 AQGI254 total biomass yield
190 AQGI222 total biomass yield
191 AQGI038 root dry weight
192 AQGI009 root dry weight
193 AQEX015 biomass yield
194 AQCB029 spikelets per panicle length
195 AQCB014 seed set percent
196 AQCB002 spikelet number
197 AQAI069 1000-grain weight
198 AQAI064 large vascular bundle number to spikelet number ratio
199 AQAG042 1000-seed weight
200 AQAG030 1000-seed weight
201 AQAG004 grain yield
202 AQAF017 blast disease resistance
203 AQAE017 seed weight
204 AQAC047 seed weight
205 AQAC028 root length
206 AQAB065 spikelet number
207 AQAB054 spikelet number
208 AQAB042 secondary branch
209 AQAB019 spikelet number
210 AQAB015 spikelet number
211 AQAB008 secondary branch
212 AQJ011 grain yield
213 AQJ008 spikelet sterility
214 AQJ002 plant height
215 AQG017 biomass yield
216 AQG009 panicle number
217 AQG007 panicle exsertion
218 AQG005 panicle length
219 AQG001 plant height
220 AQFF075 plant height
221 AQGC035 penetrated root length
222 AQGC022 penetrated root thickness
223 AQEM008 salt sensitivity
224 AQEM001 salt sensitivity
225 AQFR044 seedling vigor
226 AQFR014 seedling vigor
227 AQGI118 biomass yield
228 AQAI026 leaf area to spikelet number ratio
229 AQAF014 blast disease resistance
230 AQAF013 blast disease resistance
231 AQAF012 blast disease resistance
232 AQAE004 leaf length
233 AQEE017 cracked grain percentage
234 AQO022 root to shoot ratio
235 AQO001 biomass yield
236 AQHF019 leaf senescence
237 AQHF014 chlorophyll content
238 CQAX30 plant height
239 AQJ004 panicle number
240 CQS2 seminal root length
241 AQCF026 grain yield
242 AQCF025 spikelet fertility
243 CQX5 culm length
244 CQX22 internode length
245 CQX17 internode length
246 AQF001 grain shattering
247 AQDY026 culm length
248 AQDY024 culm length
249 AQDY025 culm length
250 AQDY023 culm length
251 AQDY022 culm length
252 AQDY021 culm length
253 AQBV009 leaf angle
254 AQCU132 leaf length
255 AQAQ008 blast disease resistance
256 CQAR4 seed number
257 CQAR2 spikelet number
258 CQAR3 spikelet density
259 CQAR1 plant height
260 CQAR6 spikelet density
261 CQAR5 spikelet number
262 CQN1 nadh-dependent glutamate synthase content
263 CQN4 soluble protein content
264 AQCS004 ultraviolet-b resistance
265 AQED013 plant height
266 AQED012 plant height
267 CQAE5 plant height
268 CQAE24 grain yield per plant
269 CQAE20 1000-grain weight
270 CQAE19 1000-grain weight
271 CQAE15 grain number
272 AQBK040 seed number
273 CQC1 plant height
274 AQBK003 plant height
275 AQCR001 grain yield
276 AQCS001 ultraviolet-b resistance
277 CQG1 adaxial stomatal frequency
278 CQX6 culm length
279 CQX21 internode length
280 CQN51 spikelet number
281 CQN5 soluble protein content
282 CQN43 panicle weight
283 CQN26 leaf senescence
284 CQN49 spikelet number
285 CQN3 soluble protein content
286 CQE3 plant height
287 CQE2 plant height
288 CQE6 specific leaf area
289 CQF2 soluble protein content
290 AQCW010 H2O2 content
291 AQCW002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000493 inflorescence 5cm stage (+)
2 MCP:1000497 inflorescence 20cm stage (+)
3 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0000016 lateral root primordium (+)
3 PO:0000258 root cortex (+)
4 PO:0006085 root meristem (+)
5 PO:0008037 seedling (+)
6 PO:0009005 root (+)
7 PO:0009006 shoot system (+)
8 PO:0009010 seed (+)
9 PO:0009047 stem (+)
10 PO:0009049 inflorescence (+)
11 PO:0020121 lateral root (+)
12 PO:0020123 root cap (+)
13 PO:0020124 root stele (+)
14 PO:0020127 primary root (+)
15 PO:0025034 leaf (+)
16 PO:0025181 root elongation zone (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000343 primary root length (+)
2 MCT:1000629 auxin accumulation (+)
3 MCT:1000645 lateral root primordia density (+)
4 TO:0000019 seedling height (+)
5 TO:0001012 lateral root length (+)
6 TO:0001013 lateral root number (+)
7 TO:0020106 Indole-3-acetic acid content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Zhao Heming; Ma Tengfei; Wang Xin; Deng Yingtian; Ma Haoli; Zhang Rongsheng; Zhao Jie; OsAUX1 controls lateral root initiation in rice (Oryza sativa L.). Plant, cell & environment 2014:
PMID [25311360]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India