Rice gene details Home Browse Search Contact Us Feedback Links Searching for LOC_Os01g66100 [gibberellin 20 oxidase 2, putative, expressed ] Basic information [Pfam DB] Graphical representation of the protein domains S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name 1 LOC_Os01g66100.1 390 225 324 PF03171.12 2OG-FeII_Oxy   The basic information is from RGAP and Pfam/InterPro databases Gene model (download) IR64 N22 Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change] N22 Flag-leaf FC   4 N22InfloresenceFC   -2 N22 Root FC IR64 Flag-leaf FC   3 IR64InfloresenceFC   -3 IR64 Root FC Functional details Molecular Function S. No. GO Id GO Description 1 GO:0003824 catalytic activity (RGAP) Biological process S. No. GO Id GO Description 1 GO:0006950 response to stress   2 GO:0046688 response to copper ion   3 GO:0016043 cellular component organization (RGAP) 4 GO:0009653 anatomical structure morphogenesis (RGAP) 5 GO:0016049 cell growth (RGAP) 6 GO:0009719 response to endogenous stimulus (RGAP) 7 GO:0008152 metabolic process (RGAP) 8 GO:0009058 biosynthetic process (RGAP) 9 GO:0009987 cellular process (RGAP) 10 GO:0006629 lipid metabolic process (RGAP) 11 GO:0000003 reproduction (RGAP) 12 GO:0009628 response to abiotic stimulus (RGAP) 13 GO:0009791 post-embryonic development (RGAP) 14 GO:0009908 flower development (RGAP) 15 GO:0007165 signal transduction (RGAP) 16 GO:0007275 multicellular organismal development (RGAP) Cellular component S. No. GO Id GO Description 1 GO:0005737 cytoplasm (RGAP) Environment details S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity 1 EO:0007069 gibberellic acid regimen (+) 2 EO:0007198 water environment (+) 3 EO:0007261 copper nutrient regimen (+) Metabolic Pathway details S. No. Pathway Id Pathway Description 1 PWY-5035 gibberellin biosynthesis III (early C-13 hydroxylation) QTL details S. No. QTL Id QTL Associated Trait 1 AQHG011 zinc sensitivity 2 AQHG004 zinc sensitivity 3 AQFT024 root dry weight 4 AQG018 grain yield 5 AQFF020 harvest index 6 AQGI250 total biomass yield 7 AQGI255 total biomass yield 8 AQGI070 root dry weight 9 AQCY031 1000-seed weight 10 AQAG025 grain number 11 AQAE013 plant height 12 AQAB074 spikelet number 13 AQAB048 spikelet number 14 AQFD013 tiller bud dormancy 15 DQC1 tiller number 16 AQO023 root to shoot ratio 17 AQO006 biomass yield 18 AQHE130 plant height 19 AQD039 relative water content 20 AQAW022 panicle number 21 AQAW021 panicle number 22 AQFE103 grain shattering 23 AQED042 1000-seed weight 24 AQED041 1000-seed weight 25 EQA0001 seed dormancy 26 AQFJ039 panicle length 27 AQFJ035 1000-seed weight 28 AQFF073 plant height 29 AQFF077 plant height 30 AQFF071 plant height 31 AQFF068 plant height 32 AQFF064 panicle number 33 AQFF059 panicle number 34 AQFF054 panicle number 35 AQFF049 panicle number 36 AQFF045 panicle number 37 AQEI044 leaf senescence 38 AQEL008 root number 39 CQAS7 spikelet density 40 CQAS6 spikelet number 41 CQAS5 panicle number 42 CQAS4 panicle length 43 CQAS3 days to maturity 44 AQEE013 head rice 45 AQED026 panicle number 46 AQED020 panicle length 47 AQED019 panicle length 48 AQEP001 seedling vigor 49 CQAQ3 plant height 50 CQAX15 plant height 51 CQAX1 plant height 52 CQAV1 osmotic adjustment capacity 53 AQFE094 plant height 54 AQFE093 plant height 55 AQCN022 rice yellow mottle virus resistance 56 AQCN021 rice yellow mottle virus resistance 57 AQCN020 rice yellow mottle virus resistance 58 AQCN019 rice yellow mottle virus resistance 59 AQCN018 rice yellow mottle virus resistance 60 AQCN017 rice yellow mottle virus resistance 61 AQCN016 rice yellow mottle virus resistance 62 AQCN002 tiller number 63 AQCN003 days to heading 64 AQCN001 plant height 65 AQEP008 seedling vigor 66 AQEP007 seedling vigor 67 AQEA012 plant height 68 AQEA013 plant height 69 AQEA011 plant height 70 AQEA010 plant height 71 AQEA009 plant height 72 AQEA008 plant height 73 AQEA007 plant height 74 AQEA006 plant height 75 AQEA005 plant height 76 AQEA004 plant height 77 AQEA003 plant height 78 AQEA002 plant height 79 AQEA001 plant height 80 AQDV054 1000-seed weight 81 AQDV045 panicle length 82 AQDV041 plant height 83 AQDV038 panicle exsertion 84 AQDV015 harvest index 85 AQDV026 panicle number 86 AQDV008 days to heading 87 AQAS002 plant height 88 DQF9 penetrated root thickness 89 DQE46 relative water content 90 DQE45 relative water content 91 DQE13 leaf rolling 92 DQE12 leaf rolling 93 CQV6 plant height 94 CQV5 plant height 95 CQV3 plant height 96 CQV4 plant height 97 CQV19 plant height 98 CQV15 plant height 99 CQV12 plant height 100 CQV1 plant height 101 CQQ6 root weight 102 CQQ33 plant height 103 CQQ32 root weight 104 CQQ13 root dry weight to tiller number ratio 105 CQAI6 plant height 106 CQAI3 plant height 107 CQAB9 plant height 108 CQAI1 plant height 109 CQAB8 plant height 110 CQAB7 plant height 111 CQAB6 plant height 112 CQAB5 plant height 113 CQAB4 plant height 114 CQAB11 plant height 115 CQAB10 plant height 116 AQFE051 panicle length 117 AQFE050 panicle length 118 AQFE049 panicle length 119 AQFE006 days to heading 120 AQFE005 days to heading 121 AQDH001 seed length 122 AQBE049 tiller number 123 AQBE048 tiller number 124 AQBE047 tiller number 125 AQBE046 tiller number 126 AQBE012 tiller number 127 AQBE011 tiller number 128 AQBE010 tiller number 129 AQBE009 tiller number 130 AQBE007 tiller number 131 AQBE008 tiller number 132 AQBE006 tiller number 133 AQBE005 tiller number 134 AQBC076 leaf length 135 AQBE004 tiller number 136 AQBC075 leaf length 137 AQBC037 tiller number 138 AQBC074 leaf length 139 AQBC036 tiller number 140 AQBC025 panicle number 141 AQBC035 tiller number 142 AQBC024 panicle number 143 AQBC005 plant height 144 AQBC023 panicle number 145 AQBC004 plant height 146 AQBC003 plant height 147 AQBC002 plant height 148 AQBC001 plant height 149 AQBB038 plant height 150 AQBB037 plant height 151 AQBB036 plant height 152 AQBB035 plant height 153 AQBB034 plant height 154 AQBB033 plant height 155 AQBB032 plant height 156 AQBB031 plant height 157 AQBB030 plant height 158 AQBB029 plant height 159 AQBB028 plant height 160 AQBB027 plant height 161 AQBB026 plant height 162 AQBB025 plant height 163 AQBB024 plant height 164 AQBB023 plant height 165 AQBB022 plant height 166 AQBB021 plant height 167 AQBB020 plant height 168 AQBB019 plant height 169 AQBB018 plant height 170 AQBB017 plant height 171 AQBB015 plant height 172 AQBB016 plant height 173 AQBB014 plant height 174 AQBB012 plant height 175 AQBB013 plant height 176 AQBB011 plant height 177 AQBB010 plant height 178 AQBB009 plant height 179 AQBB008 plant height 180 AQBB007 plant height 181 AQBB006 plant height 182 AQBB005 plant height 183 AQBB004 plant height 184 AQBB003 plant height 185 AQBB002 plant height 186 AQBB001 plant height 187 CQZ2 plant height 188 AQDQ008 plant height 189 CQP2 culm length 190 CQP1 cold tolerance 191 AQY005 plant height 192 AQY001 plant height 193 AQQ011 tiller number 194 AQQ005 grain yield 195 AQQ001 grain yield 196 AQCY001 grain yield 197 AQAI019 large vascular bundle number 198 AQAF016 blast disease resistance 199 AQAF015 blast disease resistance 200 AQAB061 large vascular bundle number 201 AQAB021 large vascular bundle number 202 AQJ011 grain yield 203 AQJ008 spikelet sterility 204 AQJ002 plant height 205 AQG017 biomass yield 206 AQG009 panicle number 207 AQG007 panicle exsertion 208 AQG005 panicle length 209 AQG001 plant height 210 AQFF075 plant height 211 AQGC035 penetrated root length 212 AQGC022 penetrated root thickness 213 AQFR044 seedling vigor 214 AQFR014 seedling vigor 215 AQGI118 biomass yield 216 AQAI026 leaf area to spikelet number ratio 217 AQAF014 blast disease resistance 218 AQAF013 blast disease resistance 219 AQAF012 blast disease resistance 220 AQAE004 leaf length 221 AQEE017 cracked grain percentage 222 CQAX30 plant height 223 AQJ004 panicle number 224 CQS2 seminal root length 225 CQX5 culm length 226 CQX22 internode length 227 CQX17 internode length 228 AQBV009 leaf angle 229 AQCU132 leaf length 230 AQAQ008 blast disease resistance 231 CQN1 nadh-dependent glutamate synthase content 232 CQN4 soluble protein content 233 AQCS004 ultraviolet-b resistance 234 AQED013 plant height 235 AQED012 plant height 236 CQAE5 plant height 237 CQAE24 grain yield per plant 238 CQAE20 1000-grain weight 239 CQAE19 1000-grain weight 240 CQAE15 grain number 241 AQBK040 seed number 242 AQCS001 ultraviolet-b resistance 243 CQG1 adaxial stomatal frequency 244 CQX6 culm length 245 CQX21 internode length 246 CQN51 spikelet number 247 CQN5 soluble protein content 248 CQN43 panicle weight 249 CQN26 leaf senescence 250 CQN49 spikelet number 251 CQN3 soluble protein content 252 CQE3 plant height 253 CQE2 plant height Plant developmental stage / tissue details Plant development stage S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity 1 MCP:1000518 seedling development stage (+) 2 PO:0007022 imbibition (+) 3 PO:0007041 inflorescence emergence from flag leaf sheath (+) 4 PO:0007089 stem elongation (+) 5 PO:0007115 LP.04 four leaves visible (+) Plant tissue/organ S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity 1 PO:0000003 whole plant (+) 2 PO:0008037 seedling (+) 3 PO:0009010 seed (+) 4 PO:0020142 stem internode (+) 5 PO:0025034 leaf (+) Others S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity Not found Trait details Not found Physical interaction details Interaction type: protein-protein Not found Interaction type: protein-DNA Not found Related publications [Sorted by year] 1  Wu Jiahe; Zhu Chuanfeng; Pang Jinhuan; Zhang Xiangrong; Yang Chunlin; Xia Guixian; Tian Yingchuan; He Chaozu; OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa. The Plant journal : for cell and molecular biology 2014:80 PMID [25353370] 2  Ye Nenghui; Li Haoxuan; Zhu Guohui; Liu Yinggao; Liu Rui; Xu Weifeng; Jing Yu; Peng Xinxiang; Zhang Jianhua; Copper Suppresses Abscisic Acid Catabolism and Catalase Activity and Inhibits Seed Germination of Rice. Plant & cell physiology 2014: PMID [25273891] 3  Ho Shin-Lon; Huang Li-Fen; Lu Chung-An; He Siou-Luan; Wang Chun-Chin; Yu Sheng-Ping; Chen Jychian; Yu Su-May; Sugar starvation- and GA-inducible calcium-dependent protein kinase 1 feedback regulates GA biosynthesis and activates a 14-3-3 protein to confer drought tolerance in rice seedlings. Plant molecular biology 2013: PMID [23329372] 4  Li Juan; Jiang Jiafu; Qian Qian; Xu Yunyuan; Zhang Cui; Xiao Jun; Du Cheng; Luo Wei; Zou Guoxing; Chen Mingluan; Huang Yunqing; Feng Yuqi; Cheng Zhukuan; Yuan Ming; Chong Kang; Mutation of Rice BC12/GDD1, Which Encodes a Kinesin-Like Protein That Binds to a GA Biosynthesis Gene Promoter, Leads to Dwarfism with Impaired Cell Elongation. The Plant Cell 2011:23 PMID [21325138] 5  Qi Weiwei; Sun Fan; Wang Qianjie; Chen Mingluan; Huang Yunqing; Feng Yu-Qi; Luo Xiaojin; Yang Jinshui; Rice ethylene-response AP2/ERF factor OsEATB restricts internode elongation by down-regulating a gibberellin biosynthetic gene. Plant Physiology 2011:157 PMID [21753115] 6  Huang Jian; Tang Ding; Shen Yi; Qin Baoxiang; Hong Lilan; You Aiqing; Li Ming; Wang Xin; Yu Hengxiu; Gu Minghong; Cheng Zhukuan; Activation of gibberellin 2-oxidase 6 decreases active gibberellin levels and creates a dominant semi-dwarf phenotype in rice (Oryza sativa L.). Journal of Genetics and Genomics 2010:37 PMID [20171575] 7  Iwamoto M; Baba-Kasai A; Kiyota S; Hara N; Takano M; ACO1, a gene for aminocyclopropane-1-carboxylate oxidase: effects on internode elongation at the heading stage in rice. Plant, Cell & Environment 2010: PMID [20040065] 8  Yaish Mahmoud W; El-Kereamy Ashraf; Zhu Tong; Beatty Perrin H; Good Allen G; Bi Yong-Mei; Rothstein Steven J; The APETALA-2-like transcription factor OsAP2-39 controls key interactions between abscisic acid and gibberellin in rice. PLoS genetics 2010:6 PMID [20838584] Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India