Rice gene details
Searching for LOC_Os01g66120 [No apical meristem protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g66120.1 304 9 134 PF02365.7 NAM
2 LOC_Os01g66120.3 248 1 78 PF02365.7 NAM
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  3
N22 Root FC
  -4
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  2
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003700 sequence-specific DNA binding transcription factor activity  
2 GO:0016563 transcription activator activity  
3 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009409 response to cold  
3 GO:0009414 response to water deprivation  
4 GO:0009611 response to wounding  
5 GO:0009620 response to fungus  
6 GO:0009628 response to abiotic stimulus  
7 GO:0009632 freezing tolerance  
8 GO:0009633 drought tolerance  
9 GO:0009651 response to salt stress  
10 GO:0009737 response to abscisic acid stimulus  
11 GO:0009753 response to jasmonic acid stimulus  
12 GO:0042538 hyperosmotic salinity response  
13 GO:0042542 response to hydrogen peroxide  
14 GO:0048589 developmental growth  
15 GO:0006950 response to stress (RGAP)
16 GO:0009058 biosynthetic process (RGAP)
17 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
18 GO:0007275 multicellular organismal development (RGAP)
19 GO:0009719 response to endogenous stimulus (RGAP)
20 GO:0007165 signal transduction (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007049 soil environment (+)
3 EO:0007080 jasmonic acid regimen (+)
4 EO:0007105 abscisic acid regimen (+)
5 EO:0007187 salicylic acid regimen (+)
6 EO:0007332 cold air temperature regimen (+)
7 EO:0007373 mechanical damage (+)
8 EO:0007404 drought environment (+)
9 EO:0007407 methyl jasmonate (+)
10 EO:0007415 hydrogen peroxide (+)
11 MCE:1000003 MS liquid media (+)
12 MCE:1000013 ethephon (+)
13 MCE:1000016 polyethylene glycol (PEG) treatment (+)
14 MCE:1000031 dexmethasone (+)
15 MCE:1000069 dessication/dehydration stress (+)
16 MCE:1000075 recovery treatment (+)
17 MCE:1000098 N-acetylcheto oligosaccharide elicitor (+)
18 MCE:1000132 sodium butyrate regimen (+)
19 MCE:1000271 Magnaporthe grisea Kyu89-246 (MAFF number 101506) (+)
20 MCE:1000285 recovery treatment from salt stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQHG011 zinc sensitivity
2 AQHG004 zinc sensitivity
3 AQFT024 root dry weight
4 AQG018 grain yield
5 AQFF020 harvest index
6 AQGI250 total biomass yield
7 AQGI255 total biomass yield
8 AQGI070 root dry weight
9 AQCY031 1000-seed weight
10 AQAG025 grain number
11 AQAE013 plant height
12 AQAB074 spikelet number
13 AQAB048 spikelet number
14 AQFD013 tiller bud dormancy
15 DQC1 tiller number
16 AQO023 root to shoot ratio
17 AQO006 biomass yield
18 AQHE130 plant height
19 AQD039 relative water content
20 AQAW022 panicle number
21 AQAW021 panicle number
22 AQFE103 grain shattering
23 AQED042 1000-seed weight
24 AQED041 1000-seed weight
25 EQA0001 seed dormancy
26 AQFJ039 panicle length
27 AQFJ035 1000-seed weight
28 AQFF073 plant height
29 AQFF077 plant height
30 AQFF071 plant height
31 AQFF068 plant height
32 AQFF064 panicle number
33 AQFF059 panicle number
34 AQFF054 panicle number
35 AQFF049 panicle number
36 AQFF045 panicle number
37 AQEI044 leaf senescence
38 AQEL008 root number
39 CQAS7 spikelet density
40 CQAS6 spikelet number
41 CQAS5 panicle number
42 CQAS4 panicle length
43 CQAS3 days to maturity
44 AQEE013 head rice
45 AQED026 panicle number
46 AQED020 panicle length
47 AQED019 panicle length
48 AQEP001 seedling vigor
49 CQAQ3 plant height
50 CQAX15 plant height
51 CQAX1 plant height
52 CQAV1 osmotic adjustment capacity
53 AQFE094 plant height
54 AQFE093 plant height
55 AQCN022 rice yellow mottle virus resistance
56 AQCN021 rice yellow mottle virus resistance
57 AQCN020 rice yellow mottle virus resistance
58 AQCN019 rice yellow mottle virus resistance
59 AQCN018 rice yellow mottle virus resistance
60 AQCN017 rice yellow mottle virus resistance
61 AQCN016 rice yellow mottle virus resistance
62 AQCN002 tiller number
63 AQCN003 days to heading
64 AQCN001 plant height
65 AQEP008 seedling vigor
66 AQEP007 seedling vigor
67 AQEA012 plant height
68 AQEA013 plant height
69 AQEA011 plant height
70 AQEA010 plant height
71 AQEA009 plant height
72 AQEA008 plant height
73 AQEA007 plant height
74 AQEA006 plant height
75 AQEA005 plant height
76 AQEA004 plant height
77 AQEA003 plant height
78 AQEA002 plant height
79 AQEA001 plant height
80 AQDV054 1000-seed weight
81 AQDV045 panicle length
82 AQDV041 plant height
83 AQDV038 panicle exsertion
84 AQDV015 harvest index
85 AQDV026 panicle number
86 AQDV008 days to heading
87 AQAS002 plant height
88 DQF9 penetrated root thickness
89 DQE46 relative water content
90 DQE45 relative water content
91 DQE13 leaf rolling
92 DQE12 leaf rolling
93 CQV6 plant height
94 CQV5 plant height
95 CQV3 plant height
96 CQV4 plant height
97 CQV19 plant height
98 CQV15 plant height
99 CQV12 plant height
100 CQV1 plant height
101 CQQ6 root weight
102 CQQ33 plant height
103 CQQ32 root weight
104 CQQ13 root dry weight to tiller number ratio
105 CQAI6 plant height
106 CQAI3 plant height
107 CQAB9 plant height
108 CQAI1 plant height
109 CQAB8 plant height
110 CQAB7 plant height
111 CQAB6 plant height
112 CQAB5 plant height
113 CQAB4 plant height
114 CQAB11 plant height
115 CQAB10 plant height
116 AQFE051 panicle length
117 AQFE050 panicle length
118 AQFE049 panicle length
119 AQFE006 days to heading
120 AQFE005 days to heading
121 AQDH001 seed length
122 AQBE049 tiller number
123 AQBE048 tiller number
124 AQBE047 tiller number
125 AQBE046 tiller number
126 AQBE012 tiller number
127 AQBE011 tiller number
128 AQBE010 tiller number
129 AQBE009 tiller number
130 AQBE007 tiller number
131 AQBE008 tiller number
132 AQBE006 tiller number
133 AQBE005 tiller number
134 AQBC076 leaf length
135 AQBE004 tiller number
136 AQBC075 leaf length
137 AQBC037 tiller number
138 AQBC074 leaf length
139 AQBC036 tiller number
140 AQBC025 panicle number
141 AQBC035 tiller number
142 AQBC024 panicle number
143 AQBC005 plant height
144 AQBC023 panicle number
145 AQBC004 plant height
146 AQBC003 plant height
147 AQBC002 plant height
148 AQBC001 plant height
149 AQBB038 plant height
150 AQBB037 plant height
151 AQBB036 plant height
152 AQBB035 plant height
153 AQBB034 plant height
154 AQBB033 plant height
155 AQBB032 plant height
156 AQBB031 plant height
157 AQBB030 plant height
158 AQBB029 plant height
159 AQBB028 plant height
160 AQBB027 plant height
161 AQBB026 plant height
162 AQBB025 plant height
163 AQBB024 plant height
164 AQBB023 plant height
165 AQBB022 plant height
166 AQBB021 plant height
167 AQBB020 plant height
168 AQBB019 plant height
169 AQBB018 plant height
170 AQBB017 plant height
171 AQBB015 plant height
172 AQBB016 plant height
173 AQBB014 plant height
174 AQBB012 plant height
175 AQBB013 plant height
176 AQBB011 plant height
177 AQBB010 plant height
178 AQBB009 plant height
179 AQBB008 plant height
180 AQBB007 plant height
181 AQBB006 plant height
182 AQBB005 plant height
183 AQBB004 plant height
184 AQBB003 plant height
185 AQBB002 plant height
186 AQBB001 plant height
187 CQZ2 plant height
188 AQDQ008 plant height
189 CQP2 culm length
190 CQP1 cold tolerance
191 AQY005 plant height
192 AQY001 plant height
193 AQQ011 tiller number
194 AQQ005 grain yield
195 AQQ001 grain yield
196 AQCY001 grain yield
197 AQAI019 large vascular bundle number
198 AQAF016 blast disease resistance
199 AQAF015 blast disease resistance
200 AQAB061 large vascular bundle number
201 AQAB021 large vascular bundle number
202 AQJ011 grain yield
203 AQJ008 spikelet sterility
204 AQJ002 plant height
205 AQG017 biomass yield
206 AQG009 panicle number
207 AQG007 panicle exsertion
208 AQG005 panicle length
209 AQG001 plant height
210 AQFF075 plant height
211 AQGC035 penetrated root length
212 AQGC022 penetrated root thickness
213 AQFR044 seedling vigor
214 AQFR014 seedling vigor
215 AQGI118 biomass yield
216 AQAI026 leaf area to spikelet number ratio
217 AQAF014 blast disease resistance
218 AQAF013 blast disease resistance
219 AQAF012 blast disease resistance
220 AQAE004 leaf length
221 AQEE017 cracked grain percentage
222 CQAX30 plant height
223 AQJ004 panicle number
224 CQS2 seminal root length
225 CQX5 culm length
226 CQX22 internode length
227 CQX17 internode length
228 AQBV009 leaf angle
229 AQCU132 leaf length
230 AQAQ008 blast disease resistance
231 CQN1 nadh-dependent glutamate synthase content
232 CQN4 soluble protein content
233 AQCS004 ultraviolet-b resistance
234 AQED013 plant height
235 AQED012 plant height
236 CQAE5 plant height
237 CQAE24 grain yield per plant
238 CQAE20 1000-grain weight
239 CQAE19 1000-grain weight
240 CQAE15 grain number
241 AQBK040 seed number
242 AQCS001 ultraviolet-b resistance
243 CQG1 adaxial stomatal frequency
244 CQX6 culm length
245 CQX21 internode length
246 CQN51 spikelet number
247 CQN5 soluble protein content
248 CQN43 panicle weight
249 CQN26 leaf senescence
250 CQN49 spikelet number
251 CQN3 soluble protein content
252 CQE3 plant height
253 CQE2 plant height

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000120 4-6 days post-anthesis stage (+)
2 MCP:1000287 4 days post-anthesis stage (+)
3 MCP:1000518 seedling development stage (+)
4 MCP:1000520 young inflorescence stage (+)
5 MCP:1000521 mature plant stage (+)
6 PO:0007013 BO.03 late boot stage (+)
7 PO:0007041 inflorescence emergence from flag leaf sheath (+)
8 PO:0007115 LP.04 four leaves visible (+)
9 PO:0007123 LP.06 six leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000001 embryo proper (+)
2 PO:0000003 whole plant (+)
3 PO:0000005 cultured plant cell (+)
4 PO:0005052 plant callus (+)
5 PO:0008037 seedling (+)
6 PO:0009005 root (+)
7 PO:0009006 shoot system (+)
8 PO:0009010 seed (+)
9 PO:0009025 vascular leaf (+)
10 PO:0009046 flower (+)
11 PO:0009047 stem (+)
12 PO:0009049 inflorescence (+)
13 PO:0020039 leaf lamina (+)
14 PO:0020141 stem node (+)
15 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000012 survival rate (+)
2 MCT:1000015 photochemical efficiency (+)
3 MCT:1000060 lesion width (+)
4 MCT:1000061 lesion length (+)
5 MCT:1000063 percent membrane conductance (+)
6 TO:0000019 seedling height (+)
7 TO:0000207 plant height (+)
8 TO:0000227 root length (+)
9 TO:0001034 relative plant height (+)
10 TO:0010001 percent germination (+)

Physical interaction details
Interaction type: protein-protein
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Amino acid involved in interaction
1 LOC_Os01g66120 1-162 LOC_Os11g08210 - 1-328 Protein-protein interaction analysis : Pull Down Assay
Interaction type: protein-DNA
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Bases
involved in interaction
Reference point cis-elements [PLACE Id]
1 LOC_Os01g66120 1-165 - to - S000413 Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
2 LOC_Os01g66120 N 1-165 LOC_Os05g46480 - -85 to -56 TSS S000413 Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
3 LOC_Os01g66120 - --- LOC_Os03g44150 - -513 to -178 TrSS Protein-DNA interaction analysis : Yeast one-hybrid analysis
      TSS - Transcriptional start site
TrSS - Translational start site
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
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Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India