Rice gene details
Searching for LOC_Os01g67810 [transposon protein, putative, unclassified, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g67810.1 558 215 547 PF03081.7 Exo70
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
N22 Root FC
IR64 Flag-leaf FC
IR64 Root FC

Functional details
Molecular Function
S. No. GO Id GO Description
Biological process
S. No. GO Id GO Description
1 GO:0046688 response to copper ion  
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000045 cupric chloride regimen (CuCl2) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQHH058 elongation ability
2 AQFF020 harvest index
3 AQGI250 total biomass yield
4 AQGI255 total biomass yield
5 AQGI070 root dry weight
6 AQCY031 1000-seed weight
7 AQAG025 grain number
8 AQAE013 plant height
9 AQAB074 spikelet number
10 AQAB048 spikelet number
11 AQFD013 tiller bud dormancy
12 DQC1 tiller number
13 AQO023 root to shoot ratio
14 AQO006 biomass yield
15 AQHE130 plant height
16 AQD039 relative water content
17 AQAW022 panicle number
18 AQAW021 panicle number
19 AQFE103 grain shattering
20 AQED042 1000-seed weight
21 AQED041 1000-seed weight
22 EQA0001 seed dormancy
23 AQFJ039 panicle length
24 AQFJ035 1000-seed weight
25 AQFF073 plant height
26 AQFF077 plant height
27 AQFF071 plant height
28 AQFF068 plant height
29 AQFF064 panicle number
30 AQFF059 panicle number
31 AQFF054 panicle number
32 AQFF049 panicle number
33 AQFF045 panicle number
34 AQEI044 leaf senescence
35 CQAS7 spikelet density
36 CQAS6 spikelet number
37 CQAS5 panicle number
38 CQAS4 panicle length
39 CQAS3 days to maturity
40 AQEE013 head rice
41 AQED026 panicle number
42 AQEP001 seedling vigor
43 CQAQ3 plant height
44 CQAX15 plant height
45 CQAX1 plant height
46 CQAV1 osmotic adjustment capacity
47 AQFE094 plant height
48 AQFE093 plant height
49 AQCN022 rice yellow mottle virus resistance
50 AQCN021 rice yellow mottle virus resistance
51 AQCN020 rice yellow mottle virus resistance
52 AQCN019 rice yellow mottle virus resistance
53 AQCN018 rice yellow mottle virus resistance
54 AQCN017 rice yellow mottle virus resistance
55 AQCN016 rice yellow mottle virus resistance
56 AQCN002 tiller number
57 AQCN003 days to heading
58 AQCN001 plant height
59 AQEP008 seedling vigor
60 AQEP007 seedling vigor
61 AQEA012 plant height
62 AQEA013 plant height
63 AQEA011 plant height
64 AQEA010 plant height
65 AQEA009 plant height
66 AQEA008 plant height
67 AQEA007 plant height
68 AQEA006 plant height
69 AQEA005 plant height
70 AQEA004 plant height
71 AQEA003 plant height
72 AQEA002 plant height
73 AQEA001 plant height
74 AQDV054 1000-seed weight
75 AQDV045 panicle length
76 AQDV041 plant height
77 AQDV038 panicle exsertion
78 AQDV015 harvest index
79 AQDV026 panicle number
80 AQDV008 days to heading
81 AQAS002 plant height
82 DQF9 penetrated root thickness
83 DQE46 relative water content
84 DQE45 relative water content
85 DQE13 leaf rolling
86 DQE12 leaf rolling
87 CQV6 plant height
88 CQV5 plant height
89 CQV3 plant height
90 CQV4 plant height
91 CQV19 plant height
92 CQV15 plant height
93 CQV12 plant height
94 CQV1 plant height
95 CQQ6 root weight
96 CQQ33 plant height
97 CQQ32 root weight
98 CQQ13 root dry weight to tiller number ratio
99 CQAI6 plant height
100 CQAI3 plant height
101 CQAB9 plant height
102 CQAI1 plant height
103 CQAB8 plant height
104 CQAB7 plant height
105 CQAB6 plant height
106 CQAB5 plant height
107 CQAB4 plant height
108 CQAB11 plant height
109 CQAB10 plant height
110 AQFE051 panicle length
111 AQFE050 panicle length
112 AQFE049 panicle length
113 AQFE006 days to heading
114 AQFE005 days to heading
115 AQDH001 seed length
116 AQBE049 tiller number
117 AQBE048 tiller number
118 AQBE047 tiller number
119 AQBE046 tiller number
120 AQBE012 tiller number
121 AQBE011 tiller number
122 AQBE010 tiller number
123 AQBE009 tiller number
124 AQBE007 tiller number
125 AQBE008 tiller number
126 AQBE006 tiller number
127 AQBE005 tiller number
128 AQBC076 leaf length
129 AQBE004 tiller number
130 AQBC075 leaf length
131 AQBC037 tiller number
132 AQBC074 leaf length
133 AQBC036 tiller number
134 AQBC025 panicle number
135 AQBC035 tiller number
136 AQBC024 panicle number
137 AQBC005 plant height
138 AQBC023 panicle number
139 AQBC004 plant height
140 AQBC003 plant height
141 AQBC002 plant height
142 AQBC001 plant height
143 AQBB038 plant height
144 AQBB037 plant height
145 AQBB036 plant height
146 AQBB035 plant height
147 AQBB034 plant height
148 AQBB033 plant height
149 AQBB032 plant height
150 AQBB031 plant height
151 AQBB030 plant height
152 AQBB029 plant height
153 AQBB028 plant height
154 AQBB027 plant height
155 AQBB026 plant height
156 AQBB025 plant height
157 AQBB024 plant height
158 AQBB023 plant height
159 AQBB022 plant height
160 AQBB021 plant height
161 AQBB020 plant height
162 AQBB019 plant height
163 AQBB018 plant height
164 AQBB017 plant height
165 AQBB015 plant height
166 AQBB016 plant height
167 AQBB014 plant height
168 AQBB012 plant height
169 AQBB013 plant height
170 AQBB011 plant height
171 AQBB010 plant height
172 AQBB009 plant height
173 AQBB008 plant height
174 AQBB007 plant height
175 AQBB006 plant height
176 AQBB005 plant height
177 AQBB004 plant height
178 AQBB003 plant height
179 AQBB002 plant height
180 AQBB001 plant height
181 CQZ2 plant height
182 AQDQ008 plant height
183 CQP2 culm length
184 CQP1 cold tolerance
185 AQY005 plant height
186 AQY001 plant height
187 AQQ011 tiller number
188 AQQ005 grain yield
189 AQQ001 grain yield
190 AQCY001 grain yield
191 AQAI019 large vascular bundle number
192 AQAF016 blast disease resistance
193 AQAF015 blast disease resistance
194 AQAB061 large vascular bundle number
195 AQAB021 large vascular bundle number
196 AQJ011 grain yield
197 AQJ008 spikelet sterility
198 AQJ002 plant height
199 AQG017 biomass yield
200 AQG009 panicle number
201 AQG007 panicle exsertion
202 AQG005 panicle length
203 AQG001 plant height
204 AQFF075 plant height
205 AQGC035 penetrated root length
206 AQGC022 penetrated root thickness
207 AQFR044 seedling vigor
208 AQFR014 seedling vigor
209 AQGI118 biomass yield
210 AQAI026 leaf area to spikelet number ratio
211 AQAF014 blast disease resistance
212 AQAF013 blast disease resistance
213 AQAF012 blast disease resistance
214 AQAE004 leaf length
215 CQAX30 plant height
216 AQJ004 panicle number
217 CQX5 culm length
218 CQX22 internode length
219 CQX17 internode length
220 AQBV009 leaf angle
221 AQCU132 leaf length
222 AQAQ008 blast disease resistance
223 CQN1 nadh-dependent glutamate synthase content
224 CQN4 soluble protein content
225 AQCS004 ultraviolet-b resistance
226 AQED013 plant height
227 AQED012 plant height
228 CQAE5 plant height
229 CQAE24 grain yield per plant
230 CQAE20 1000-grain weight
231 CQAE19 1000-grain weight
232 CQAE15 grain number
233 AQBK040 seed number
234 AQCS001 ultraviolet-b resistance
235 CQG1 adaxial stomatal frequency
236 CQN49 spikelet number
237 CQN3 soluble protein content
238 CQE3 plant height
239 CQE2 plant height

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000025 root tip (+)
2 PO:0009005 root (+)
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Lin Chung-Yi; Trinh Ngoc Nam; Fu Shih-Feng; Hsiung Yu-Chyuan; Chia Li-Chiao; Lin Chung-Wen; Huang Hao-Jen; Comparison of early transcriptome responses to copper and cadmium in rice roots. Plant molecular biology 2013:
PMID [23400832]

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India