Rice gene details Home Browse Search Contact Us Feedback Links Searching for LOC_Os01g68480 [thioredoxin, putative, expressed ] Basic information [Pfam DB] Graphical representation of the protein domains S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name 1 LOC_Os01g68480.1 188 82 184 PF00085.12 Thioredoxin   The basic information is from RGAP and Pfam/InterPro databases Gene model (download) IR64 N22 Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change] N22 Flag-leaf FC   1 N22InfloresenceFC   3 N22 Root FC   4 IR64 Flag-leaf FC   1 IR64InfloresenceFC   1 IR64 Root FC   -1 Functional details Molecular Function Not found 1 GO:0030234 enzyme regulator activity (RGAP) Biological process Not found 1 GO:0008152 metabolic process (RGAP) Cellular component Not found 1 GO:0005829 cytosol (RGAP) 2 GO:0009536 plastid (RGAP) Environment details S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity 1 EO:0007069 gibberellic acid regimen (-) 2 EO:0007196 light regimen (-) 3 EO:0007204 1-naphthaleneacetic acid (-) 4 EO:0007290 kinetin regimen (-) 5 MCE:1000203 dark regimen (-) Metabolic Pathway details Not found QTL details S. No. QTL Id QTL Associated Trait 1 DQC3 root number 2 AQD016 leaf drying 3 AQO077 root number 4 AQC003 root number 5 AQCU208 leaf length 6 AQCU038 spikelet number 7 AQCU180 days to heading 8 AQCE023 primary branch length 9 AQFW014 spikelet number 10 AQFR022 seedling vigor 11 AQCU100 spikelet fertility 12 AQAP045 brown planthopper resistance 13 AQGB033 grain width 14 AQAW033 dry mass 15 CQE5 leaf height 16 AQEG001 plant height 17 AQGI250 total biomass yield 18 AQGI255 total biomass yield 19 AQGI070 root dry weight 20 AQCY031 1000-seed weight 21 AQAG025 grain number 22 AQAE013 plant height 23 AQAB074 spikelet number 24 AQAB048 spikelet number 25 AQFD013 tiller bud dormancy 26 AQFE103 grain shattering 27 AQED042 1000-seed weight 28 AQED041 1000-seed weight 29 EQA0001 seed dormancy 30 AQFJ039 panicle length 31 AQFJ035 1000-seed weight 32 AQFF073 plant height 33 AQFF077 plant height 34 AQFF071 plant height 35 AQFF068 plant height 36 AQFF064 panicle number 37 AQFF059 panicle number 38 AQFF054 panicle number 39 AQFF049 panicle number 40 AQFF045 panicle number 41 AQEI044 leaf senescence 42 CQAS7 spikelet density 43 CQAS6 spikelet number 44 CQAS5 panicle number 45 CQAS4 panicle length 46 CQAS3 days to maturity 47 AQEE013 head rice 48 AQED026 panicle number 49 AQEP001 seedling vigor 50 CQAQ3 plant height 51 CQAX15 plant height 52 CQAX1 plant height 53 CQAV1 osmotic adjustment capacity 54 AQFE094 plant height 55 AQFE093 plant height 56 AQCN022 rice yellow mottle virus resistance 57 AQCN021 rice yellow mottle virus resistance 58 AQCN020 rice yellow mottle virus resistance 59 AQCN019 rice yellow mottle virus resistance 60 AQCN018 rice yellow mottle virus resistance 61 AQCN017 rice yellow mottle virus resistance 62 AQCN016 rice yellow mottle virus resistance 63 AQCN002 tiller number 64 AQCN003 days to heading 65 AQCN001 plant height 66 AQEP008 seedling vigor 67 AQEP007 seedling vigor 68 AQEA012 plant height 69 AQEA013 plant height 70 AQEA011 plant height 71 AQEA010 plant height 72 AQEA009 plant height 73 AQEA008 plant height 74 AQEA007 plant height 75 AQEA006 plant height 76 AQEA005 plant height 77 AQEA004 plant height 78 AQEA003 plant height 79 AQEA002 plant height 80 AQEA001 plant height 81 AQDV054 1000-seed weight 82 AQDV045 panicle length 83 AQDV041 plant height 84 AQDV038 panicle exsertion 85 AQDV015 harvest index 86 AQDV026 panicle number 87 AQDV008 days to heading 88 AQAS002 plant height 89 DQF9 penetrated root thickness 90 DQE46 relative water content 91 DQE45 relative water content 92 DQE13 leaf rolling 93 DQE12 leaf rolling 94 CQV6 plant height 95 CQV5 plant height 96 CQV3 plant height 97 CQV4 plant height 98 CQV19 plant height 99 CQV15 plant height 100 CQV12 plant height 101 CQV1 plant height 102 CQQ6 root weight 103 CQQ33 plant height 104 CQQ32 root weight 105 CQQ13 root dry weight to tiller number ratio 106 CQAI6 plant height 107 CQAI3 plant height 108 CQAB9 plant height 109 CQAI1 plant height 110 CQAB8 plant height 111 CQAB7 plant height 112 CQAB6 plant height 113 CQAB5 plant height 114 CQAB4 plant height 115 CQAB11 plant height 116 CQAB10 plant height 117 AQFE051 panicle length 118 AQFE050 panicle length 119 AQFE049 panicle length 120 AQFE006 days to heading 121 AQFE005 days to heading 122 AQDH001 seed length 123 AQBE049 tiller number 124 AQBE048 tiller number 125 AQBE047 tiller number 126 AQBE046 tiller number 127 AQBE012 tiller number 128 AQBE011 tiller number 129 AQBE010 tiller number 130 AQBE009 tiller number 131 AQBE007 tiller number 132 AQBE008 tiller number 133 AQBE006 tiller number 134 AQBE005 tiller number 135 AQBC076 leaf length 136 AQBE004 tiller number 137 AQBC075 leaf length 138 AQBC037 tiller number 139 AQBC074 leaf length 140 AQBC036 tiller number 141 AQBC025 panicle number 142 AQBC035 tiller number 143 AQBC024 panicle number 144 AQBC005 plant height 145 AQBC023 panicle number 146 AQBC004 plant height 147 AQBC003 plant height 148 AQBC002 plant height 149 AQBC001 plant height 150 AQBB038 plant height 151 AQBB037 plant height 152 AQBB036 plant height 153 AQBB035 plant height 154 AQBB034 plant height 155 AQBB033 plant height 156 AQBB032 plant height 157 AQBB031 plant height 158 AQBB030 plant height 159 AQBB029 plant height 160 AQBB028 plant height 161 AQBB027 plant height 162 AQBB026 plant height 163 AQBB025 plant height 164 AQBB024 plant height 165 AQBB023 plant height 166 AQBB022 plant height 167 AQBB021 plant height 168 AQBB020 plant height 169 AQBB019 plant height 170 AQBB018 plant height 171 AQBB017 plant height 172 AQBB015 plant height 173 AQBB016 plant height 174 AQBB014 plant height 175 AQBB012 plant height 176 AQBB013 plant height 177 AQBB011 plant height 178 AQBB010 plant height 179 AQBB009 plant height 180 AQBB008 plant height 181 AQBB007 plant height 182 AQBB006 plant height 183 AQBB005 plant height 184 AQBB004 plant height 185 AQBB003 plant height 186 AQBB002 plant height 187 AQBB001 plant height 188 CQZ2 plant height 189 AQDQ008 plant height 190 CQP2 culm length 191 CQP1 cold tolerance 192 AQY005 plant height 193 AQY001 plant height 194 AQQ011 tiller number 195 AQQ005 grain yield 196 AQQ001 grain yield 197 AQCY001 grain yield 198 AQAI019 large vascular bundle number 199 AQAF016 blast disease resistance 200 AQAF015 blast disease resistance 201 AQAB061 large vascular bundle number 202 AQAB021 large vascular bundle number 203 AQJ011 grain yield 204 AQJ008 spikelet sterility 205 AQJ002 plant height 206 AQG017 biomass yield 207 AQG009 panicle number 208 AQG007 panicle exsertion 209 AQG005 panicle length 210 AQG001 plant height 211 AQFF075 plant height 212 AQGC035 penetrated root length 213 AQGC022 penetrated root thickness 214 AQFR044 seedling vigor 215 AQFR014 seedling vigor 216 AQGI118 biomass yield 217 AQAI026 leaf area to spikelet number ratio 218 AQAF014 blast disease resistance 219 AQAF013 blast disease resistance 220 AQAF012 blast disease resistance 221 AQAE004 leaf length 222 CQAX30 plant height 223 AQJ004 panicle number 224 CQX5 culm length 225 CQX22 internode length 226 CQX17 internode length 227 AQBV009 leaf angle 228 AQCU132 leaf length 229 AQAQ008 blast disease resistance 230 CQN1 nadh-dependent glutamate synthase content 231 CQN4 soluble protein content 232 AQCS004 ultraviolet-b resistance 233 AQED013 plant height 234 AQED012 plant height 235 CQAE5 plant height 236 CQAE24 grain yield per plant 237 CQAE20 1000-grain weight 238 CQAE19 1000-grain weight 239 CQAE15 grain number 240 AQBK040 seed number 241 AQCS001 ultraviolet-b resistance 242 CQG1 adaxial stomatal frequency 243 CQN49 spikelet number 244 CQN3 soluble protein content 245 CQE3 plant height 246 CQE2 plant height Plant developmental stage / tissue details Plant development stage S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity 1 MCP:1000107 post-germination stage (+) 2 MCP:1000110 1 day pre-heading stage (+) 3 MCP:1000136 5 days pre-heading stage (+) 4 MCP:1000194 inflorescence 4-5cm stage (+) 5 MCP:1000201 14 days post-heading stage (+) 6 MCP:1000250 inflorescenece secondary branch primordium differentiation stage (+) 7 MCP:1000489 3 days post-anthesis stage (+) 8 MCP:1000518 seedling development stage (-) 9 PO:0007015 radicle emergence (-) 10 PO:0007022 imbibition (-) 11 PO:0007041 inflorescence emergence from flag leaf sheath (+) 12 PO:0007071 2.02 main shoot and axillary shoots visible at two nodes (+) 13 PO:0007106 LP.03 three leaves visible (+) Plant tissue/organ S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity 1 PO:0000001 embryo proper (+) 2 PO:0005052 plant callus (-) 3 PO:0006000 Poaceae hull (+) 4 PO:0009005 root (+) 5 PO:0009006 shoot system (+) 6 PO:0009010 seed (-) 7 PO:0009025 vascular leaf (+) 8 PO:0009029 stamen (+) 9 PO:0009047 stem (+) 10 PO:0009049 inflorescence (+) 11 PO:0009051 spikelet (+) 12 PO:0020031 radicle (+) 13 PO:0020032 plumule (-) 14 PO:0020103 flag leaf (+) 15 PO:0020104 leaf sheath (+) 16 PO:0025034 leaf (-) Others S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity Not found Trait details Not found Physical interaction details Interaction type: protein-protein Not found Interaction type: protein-DNA Not found Related publications [Sorted by year] 1  Nuruzzaman Mohammed; Gupta Madhur; Zhang Chengjun; Wang Lei; Xie Weibo; Xiong Lizhong; Zhang Qifa; Lian Xingming; Sequence and expression analysis of the thioredoxin protein gene family in rice. Molecular genetics and genomics 2008:280 PMID [18491141] Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India