Rice gene details
Searching for LOC_Os01g68480 [thioredoxin, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g68480.1 188 82 184 PF00085.12 Thioredoxin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  3
N22 Root FC
  4
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0030234 enzyme regulator activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
Cellular component
Not found
1 GO:0005829 cytosol (RGAP)
2 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007069 gibberellic acid regimen (-)
2 EO:0007196 light regimen (-)
3 EO:0007204 1-naphthaleneacetic acid (-)
4 EO:0007290 kinetin regimen (-)
5 MCE:1000203 dark regimen (-)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 DQC3 root number
2 AQD016 leaf drying
3 AQO077 root number
4 AQC003 root number
5 AQCU208 leaf length
6 AQCU038 spikelet number
7 AQCU180 days to heading
8 AQCE023 primary branch length
9 AQFW014 spikelet number
10 AQFR022 seedling vigor
11 AQCU100 spikelet fertility
12 AQAP045 brown planthopper resistance
13 AQGB033 grain width
14 AQAW033 dry mass
15 CQE5 leaf height
16 AQEG001 plant height
17 AQGI250 total biomass yield
18 AQGI255 total biomass yield
19 AQGI070 root dry weight
20 AQCY031 1000-seed weight
21 AQAG025 grain number
22 AQAE013 plant height
23 AQAB074 spikelet number
24 AQAB048 spikelet number
25 AQFD013 tiller bud dormancy
26 AQFE103 grain shattering
27 AQED042 1000-seed weight
28 AQED041 1000-seed weight
29 EQA0001 seed dormancy
30 AQFJ039 panicle length
31 AQFJ035 1000-seed weight
32 AQFF073 plant height
33 AQFF077 plant height
34 AQFF071 plant height
35 AQFF068 plant height
36 AQFF064 panicle number
37 AQFF059 panicle number
38 AQFF054 panicle number
39 AQFF049 panicle number
40 AQFF045 panicle number
41 AQEI044 leaf senescence
42 CQAS7 spikelet density
43 CQAS6 spikelet number
44 CQAS5 panicle number
45 CQAS4 panicle length
46 CQAS3 days to maturity
47 AQEE013 head rice
48 AQED026 panicle number
49 AQEP001 seedling vigor
50 CQAQ3 plant height
51 CQAX15 plant height
52 CQAX1 plant height
53 CQAV1 osmotic adjustment capacity
54 AQFE094 plant height
55 AQFE093 plant height
56 AQCN022 rice yellow mottle virus resistance
57 AQCN021 rice yellow mottle virus resistance
58 AQCN020 rice yellow mottle virus resistance
59 AQCN019 rice yellow mottle virus resistance
60 AQCN018 rice yellow mottle virus resistance
61 AQCN017 rice yellow mottle virus resistance
62 AQCN016 rice yellow mottle virus resistance
63 AQCN002 tiller number
64 AQCN003 days to heading
65 AQCN001 plant height
66 AQEP008 seedling vigor
67 AQEP007 seedling vigor
68 AQEA012 plant height
69 AQEA013 plant height
70 AQEA011 plant height
71 AQEA010 plant height
72 AQEA009 plant height
73 AQEA008 plant height
74 AQEA007 plant height
75 AQEA006 plant height
76 AQEA005 plant height
77 AQEA004 plant height
78 AQEA003 plant height
79 AQEA002 plant height
80 AQEA001 plant height
81 AQDV054 1000-seed weight
82 AQDV045 panicle length
83 AQDV041 plant height
84 AQDV038 panicle exsertion
85 AQDV015 harvest index
86 AQDV026 panicle number
87 AQDV008 days to heading
88 AQAS002 plant height
89 DQF9 penetrated root thickness
90 DQE46 relative water content
91 DQE45 relative water content
92 DQE13 leaf rolling
93 DQE12 leaf rolling
94 CQV6 plant height
95 CQV5 plant height
96 CQV3 plant height
97 CQV4 plant height
98 CQV19 plant height
99 CQV15 plant height
100 CQV12 plant height
101 CQV1 plant height
102 CQQ6 root weight
103 CQQ33 plant height
104 CQQ32 root weight
105 CQQ13 root dry weight to tiller number ratio
106 CQAI6 plant height
107 CQAI3 plant height
108 CQAB9 plant height
109 CQAI1 plant height
110 CQAB8 plant height
111 CQAB7 plant height
112 CQAB6 plant height
113 CQAB5 plant height
114 CQAB4 plant height
115 CQAB11 plant height
116 CQAB10 plant height
117 AQFE051 panicle length
118 AQFE050 panicle length
119 AQFE049 panicle length
120 AQFE006 days to heading
121 AQFE005 days to heading
122 AQDH001 seed length
123 AQBE049 tiller number
124 AQBE048 tiller number
125 AQBE047 tiller number
126 AQBE046 tiller number
127 AQBE012 tiller number
128 AQBE011 tiller number
129 AQBE010 tiller number
130 AQBE009 tiller number
131 AQBE007 tiller number
132 AQBE008 tiller number
133 AQBE006 tiller number
134 AQBE005 tiller number
135 AQBC076 leaf length
136 AQBE004 tiller number
137 AQBC075 leaf length
138 AQBC037 tiller number
139 AQBC074 leaf length
140 AQBC036 tiller number
141 AQBC025 panicle number
142 AQBC035 tiller number
143 AQBC024 panicle number
144 AQBC005 plant height
145 AQBC023 panicle number
146 AQBC004 plant height
147 AQBC003 plant height
148 AQBC002 plant height
149 AQBC001 plant height
150 AQBB038 plant height
151 AQBB037 plant height
152 AQBB036 plant height
153 AQBB035 plant height
154 AQBB034 plant height
155 AQBB033 plant height
156 AQBB032 plant height
157 AQBB031 plant height
158 AQBB030 plant height
159 AQBB029 plant height
160 AQBB028 plant height
161 AQBB027 plant height
162 AQBB026 plant height
163 AQBB025 plant height
164 AQBB024 plant height
165 AQBB023 plant height
166 AQBB022 plant height
167 AQBB021 plant height
168 AQBB020 plant height
169 AQBB019 plant height
170 AQBB018 plant height
171 AQBB017 plant height
172 AQBB015 plant height
173 AQBB016 plant height
174 AQBB014 plant height
175 AQBB012 plant height
176 AQBB013 plant height
177 AQBB011 plant height
178 AQBB010 plant height
179 AQBB009 plant height
180 AQBB008 plant height
181 AQBB007 plant height
182 AQBB006 plant height
183 AQBB005 plant height
184 AQBB004 plant height
185 AQBB003 plant height
186 AQBB002 plant height
187 AQBB001 plant height
188 CQZ2 plant height
189 AQDQ008 plant height
190 CQP2 culm length
191 CQP1 cold tolerance
192 AQY005 plant height
193 AQY001 plant height
194 AQQ011 tiller number
195 AQQ005 grain yield
196 AQQ001 grain yield
197 AQCY001 grain yield
198 AQAI019 large vascular bundle number
199 AQAF016 blast disease resistance
200 AQAF015 blast disease resistance
201 AQAB061 large vascular bundle number
202 AQAB021 large vascular bundle number
203 AQJ011 grain yield
204 AQJ008 spikelet sterility
205 AQJ002 plant height
206 AQG017 biomass yield
207 AQG009 panicle number
208 AQG007 panicle exsertion
209 AQG005 panicle length
210 AQG001 plant height
211 AQFF075 plant height
212 AQGC035 penetrated root length
213 AQGC022 penetrated root thickness
214 AQFR044 seedling vigor
215 AQFR014 seedling vigor
216 AQGI118 biomass yield
217 AQAI026 leaf area to spikelet number ratio
218 AQAF014 blast disease resistance
219 AQAF013 blast disease resistance
220 AQAF012 blast disease resistance
221 AQAE004 leaf length
222 CQAX30 plant height
223 AQJ004 panicle number
224 CQX5 culm length
225 CQX22 internode length
226 CQX17 internode length
227 AQBV009 leaf angle
228 AQCU132 leaf length
229 AQAQ008 blast disease resistance
230 CQN1 nadh-dependent glutamate synthase content
231 CQN4 soluble protein content
232 AQCS004 ultraviolet-b resistance
233 AQED013 plant height
234 AQED012 plant height
235 CQAE5 plant height
236 CQAE24 grain yield per plant
237 CQAE20 1000-grain weight
238 CQAE19 1000-grain weight
239 CQAE15 grain number
240 AQBK040 seed number
241 AQCS001 ultraviolet-b resistance
242 CQG1 adaxial stomatal frequency
243 CQN49 spikelet number
244 CQN3 soluble protein content
245 CQE3 plant height
246 CQE2 plant height

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (+)
2 MCP:1000110 1 day pre-heading stage (+)
3 MCP:1000136 5 days pre-heading stage (+)
4 MCP:1000194 inflorescence 4-5cm stage (+)
5 MCP:1000201 14 days post-heading stage (+)
6 MCP:1000250 inflorescenece secondary branch primordium differentiation stage (+)
7 MCP:1000489 3 days post-anthesis stage (+)
8 MCP:1000518 seedling development stage (-)
9 PO:0007015 radicle emergence (-)
10 PO:0007022 imbibition (-)
11 PO:0007041 inflorescence emergence from flag leaf sheath (+)
12 PO:0007071 2.02 main shoot and axillary shoots visible at two nodes (+)
13 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000001 embryo proper (+)
2 PO:0005052 plant callus (-)
3 PO:0006000 Poaceae hull (+)
4 PO:0009005 root (+)
5 PO:0009006 shoot system (+)
6 PO:0009010 seed (-)
7 PO:0009025 vascular leaf (+)
8 PO:0009029 stamen (+)
9 PO:0009047 stem (+)
10 PO:0009049 inflorescence (+)
11 PO:0009051 spikelet (+)
12 PO:0020031 radicle (+)
13 PO:0020032 plumule (-)
14 PO:0020103 flag leaf (+)
15 PO:0020104 leaf sheath (+)
16 PO:0025034 leaf (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nuruzzaman Mohammed; Gupta Madhur; Zhang Chengjun; Wang Lei; Xie Weibo; Xiong Lizhong; Zhang Qifa; Lian Xingming; Sequence and expression analysis of the thioredoxin protein gene family in rice. Molecular genetics and genomics 2008:280
PMID [18491141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India