Rice gene details
Searching for LOC_Os01g69920 [histidine kinase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g69920.1 1024 151 377 PF03924.5 CHASE
2 LOC_Os01g69920.1 1024 438 503 PF00512.17 HisKA
3 LOC_Os01g69920.1 1024 550 714 PF02518.18 HATPase_c
4 LOC_Os01g69920.1 1024 881 1013 PF00072.16 Response_reg
5 LOC_Os01g69920.2 867 1 220 PF03924.5 CHASE
6 LOC_Os01g69920.2 867 281 346 PF00512.17 HisKA
7 LOC_Os01g69920.2 867 393 557 PF02518.18 HATPase_c
8 LOC_Os01g69920.2 867 724 856 PF00072.16 Response_reg
9 LOC_Os01g69920.3 939 151 377 PF03924.5 CHASE
10 LOC_Os01g69920.3 939 438 503 PF00512.17 HisKA
11 LOC_Os01g69920.3 939 550 714 PF02518.18 HATPase_c
12 LOC_Os01g69920.3 939 881 938 PF00072.16 Response_reg
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  -1
N22 Root FC
  2
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0004872 receptor activity (RGAP)
2 GO:0004871 signal transducer activity (RGAP)
3 GO:0016301 kinase activity (RGAP)
4 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009414 response to water deprivation  
2 GO:0009737 response to abscisic acid stimulus  
3 GO:0042542 response to hydrogen peroxide  
4 GO:0009987 cellular process (RGAP)
5 GO:0006950 response to stress (RGAP)
6 GO:0009628 response to abiotic stimulus (RGAP)
7 GO:0007275 multicellular organismal development (RGAP)
8 GO:0009908 flower development (RGAP)
9 GO:0009607 response to biotic stimulus (RGAP)
10 GO:0006810 transport (RGAP)
11 GO:0009056 catabolic process (RGAP)
12 GO:0007165 signal transduction (RGAP)
13 GO:0009719 response to endogenous stimulus (RGAP)
14 GO:0040007 growth (RGAP)
15 GO:0008150 biological_process (RGAP)
16 GO:0009991 response to extracellular stimulus (RGAP)
17 GO:0007154 cell communication (RGAP)
18 GO:0006464 protein modification process (RGAP)
19 GO:0009791 post-embryonic development (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005737 cytoplasm  
2 GO:0005886 plasma membrane  
3 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007105 abscisic acid regimen (+)
2 EO:0007198 water environment (+)
3 EO:0007383 watering regimen (+)
4 EO:0007415 hydrogen peroxide (+)
5 MCE:1000016 polyethylene glycol (PEG) treatment (+)
6 MCE:1000028 diphenyleneiodonium (DPI) (+)
7 MCE:1000103 fluridone (+)
8 MCE:1000314 1,3-Dimethylthiourea (DMTU) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQL1 relative root length
2 CQL2 relative root length
3 CQK1 panicle number
4 CQK2 panicle number
5 CQJ2 panicle number
6 CQJ1 panicle number
7 AQEZ006 aluminum sensitivity
8 AQEZ005 aluminum sensitivity
9 AQEZ002 aluminum sensitivity
10 AQEZ001 aluminum sensitivity
11 AQFE068 100-grain weight
12 AQED027 panicle number
13 AQFE067 100-grain weight
14 AQFR030 seedling vigor
15 CQAE6 plant height
16 DQC3 root number
17 AQD016 leaf drying
18 AQO077 root number
19 AQC003 root number
20 AQCU208 leaf length
21 AQCU038 spikelet number
22 AQCU180 days to heading
23 AQCE023 primary branch length
24 AQFW014 spikelet number
25 AQFR022 seedling vigor
26 AQCU100 spikelet fertility
27 AQAP045 brown planthopper resistance
28 AQGB033 grain width
29 CQE5 leaf height
30 AQEG001 plant height
31 AQGI250 total biomass yield
32 AQGI255 total biomass yield
33 AQGI070 root dry weight
34 AQCY031 1000-seed weight
35 AQAG025 grain number
36 AQAE013 plant height
37 AQAB074 spikelet number
38 AQAB048 spikelet number
39 AQFD013 tiller bud dormancy
40 AQFE103 grain shattering
41 AQED042 1000-seed weight
42 AQED041 1000-seed weight
43 CQAS7 spikelet density
44 CQAS6 spikelet number
45 CQAS5 panicle number
46 CQAS4 panicle length
47 CQAS3 days to maturity
48 AQEE013 head rice
49 AQED026 panicle number
50 AQEP001 seedling vigor
51 CQAQ3 plant height
52 CQAX15 plant height
53 CQAX1 plant height
54 CQAV1 osmotic adjustment capacity
55 AQFE094 plant height
56 AQFE093 plant height
57 AQCN022 rice yellow mottle virus resistance
58 AQCN021 rice yellow mottle virus resistance
59 AQCN020 rice yellow mottle virus resistance
60 AQCN019 rice yellow mottle virus resistance
61 AQCN018 rice yellow mottle virus resistance
62 AQCN017 rice yellow mottle virus resistance
63 AQCN016 rice yellow mottle virus resistance
64 AQCN002 tiller number
65 AQCN003 days to heading
66 AQCN001 plant height
67 AQEP008 seedling vigor
68 AQEP007 seedling vigor
69 AQEA012 plant height
70 AQEA013 plant height
71 AQEA011 plant height
72 AQEA010 plant height
73 AQEA009 plant height
74 AQEA008 plant height
75 AQEA007 plant height
76 AQEA006 plant height
77 AQEA005 plant height
78 AQEA004 plant height
79 AQEA003 plant height
80 AQEA002 plant height
81 AQEA001 plant height
82 AQDV054 1000-seed weight
83 AQDV045 panicle length
84 AQDV041 plant height
85 AQDV038 panicle exsertion
86 AQDV015 harvest index
87 AQDV026 panicle number
88 AQDV008 days to heading
89 AQAS002 plant height
90 DQF9 penetrated root thickness
91 DQE46 relative water content
92 DQE45 relative water content
93 DQE13 leaf rolling
94 DQE12 leaf rolling
95 CQV6 plant height
96 CQV5 plant height
97 CQV3 plant height
98 CQV4 plant height
99 CQV19 plant height
100 CQV15 plant height
101 CQV12 plant height
102 CQV1 plant height
103 CQQ6 root weight
104 CQQ33 plant height
105 CQQ32 root weight
106 CQQ13 root dry weight to tiller number ratio
107 CQAI6 plant height
108 CQAI3 plant height
109 CQAB9 plant height
110 CQAI1 plant height
111 CQAB8 plant height
112 CQAB7 plant height
113 CQAB6 plant height
114 CQAB5 plant height
115 CQAB4 plant height
116 CQAB11 plant height
117 CQAB10 plant height
118 AQFE051 panicle length
119 AQFE050 panicle length
120 AQFE049 panicle length
121 AQFE006 days to heading
122 AQFE005 days to heading
123 AQDH001 seed length
124 AQBE049 tiller number
125 AQBE048 tiller number
126 AQBE047 tiller number
127 AQBE046 tiller number
128 AQBE012 tiller number
129 AQBE011 tiller number
130 AQBE010 tiller number
131 AQBE009 tiller number
132 AQBE007 tiller number
133 AQBE008 tiller number
134 AQBE006 tiller number
135 AQBE005 tiller number
136 AQBC076 leaf length
137 AQBE004 tiller number
138 AQBC075 leaf length
139 AQBC037 tiller number
140 AQBC074 leaf length
141 AQBC036 tiller number
142 AQBC025 panicle number
143 AQBC035 tiller number
144 AQBC024 panicle number
145 AQBC005 plant height
146 AQBC023 panicle number
147 AQBC004 plant height
148 AQBC003 plant height
149 AQBC002 plant height
150 AQBC001 plant height
151 AQBB038 plant height
152 AQBB037 plant height
153 AQBB036 plant height
154 AQBB035 plant height
155 AQBB034 plant height
156 AQBB033 plant height
157 AQBB032 plant height
158 AQBB031 plant height
159 AQBB030 plant height
160 AQBB029 plant height
161 AQBB028 plant height
162 AQBB027 plant height
163 AQBB026 plant height
164 AQBB025 plant height
165 AQBB024 plant height
166 AQBB023 plant height
167 AQBB022 plant height
168 AQBB021 plant height
169 AQBB020 plant height
170 AQBB019 plant height
171 AQBB018 plant height
172 AQBB017 plant height
173 AQBB015 plant height
174 AQBB016 plant height
175 AQBB014 plant height
176 AQBB012 plant height
177 AQBB013 plant height
178 AQBB011 plant height
179 AQBB010 plant height
180 AQBB009 plant height
181 AQBB008 plant height
182 AQBB007 plant height
183 AQBB006 plant height
184 AQBB005 plant height
185 AQBB004 plant height
186 AQBB003 plant height
187 AQBB002 plant height
188 AQBB001 plant height
189 AQDQ008 plant height
190 AQY005 plant height
191 AQY001 plant height
192 AQJ011 grain yield
193 AQJ008 spikelet sterility
194 AQJ002 plant height
195 AQG017 biomass yield
196 AQG009 panicle number
197 AQG007 panicle exsertion
198 AQG005 panicle length
199 AQG001 plant height
200 CQAX30 plant height
201 AQJ004 panicle number
202 CQX5 culm length
203 CQX22 internode length
204 CQX17 internode length
205 AQBV009 leaf angle
206 AQCU132 leaf length
207 AQAQ008 blast disease resistance
208 CQN1 nadh-dependent glutamate synthase content
209 CQN4 soluble protein content
210 AQCS004 ultraviolet-b resistance
211 AQED013 plant height
212 AQED012 plant height
213 AQBK040 seed number
214 AQCS001 ultraviolet-b resistance
215 CQG1 adaxial stomatal frequency
216 CQN49 spikelet number
217 CQN3 soluble protein content
218 CQE3 plant height
219 CQE2 plant height

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0001053 3 leaf fully expanded (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000315 second leaf from base (+)
2 PO:0000006 plant protoplast (+)
3 PO:0009047 stem (+)
4 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000034 superoxide dismutase (SOD) activity (+)
2 MCT:1000038 catalase (CAT) activity (+)
3 MCT:1000044 ascorbate peroxidase activity (APX) (+)
4 MCT:1000218 hydrogen peroxide accumulation (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Wen Feng; Qin Tingting; Wang Yao; Dong Wen; Zhang Aying; Tan Mingpu; Jiang Mingyi; OsHK3 is a crucial regulator of abscisic acid signaling involved in antioxidant defense in rice. Journal of integrative plant biology 2014:
PMID [24912543]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India