Rice gene details
Searching for LOC_Os01g71240 [calcium-transporting ATPase, plasma membrane-type, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g71240.1 1044 115 194 PF00690.18 Cation_ATPase_N
2 LOC_Os01g71240.1 1044 208 450 PF00122.12 E1-E2_ATPase
3 LOC_Os01g71240.1 1044 454 782 PF00702.18 Hydrolase
4 LOC_Os01g71240.1 1044 843 1018 PF00689.13 Cation_ATPase_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -5
N22 Root FC
  -4
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  -1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016787 hydrolase activity (RGAP)
2 GO:0005215 transporter activity (RGAP)
3 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009651 response to salt stress  
3 GO:0006810 transport (RGAP)
4 GO:0009987 cellular process (RGAP)
5 GO:0008219 cell death (RGAP)
6 GO:0006950 response to stress (RGAP)
7 GO:0009607 response to biotic stimulus (RGAP)
8 GO:0008150 biological_process (RGAP)
9 GO:0009056 catabolic process (RGAP)
10 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005773 vacuole (RGAP)
2 GO:0016020 membrane (RGAP)
3 GO:0005886 plasma membrane (RGAP)
4 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQFD016 tiller bud dormancy
2 AQEP002 seedling vigor
3 AQDJ011 internode length
4 DQE47 relative water content
5 DQE34 relative growth rate
6 DQE16 leaf rolling
7 DQE2 leaf drying
8 DQE15 leaf rolling
9 CQAI9 tiller number
10 DQE14 leaf rolling
11 AQDP004 iron sensitivity
12 AQDH005 seed width
13 AQDP002 iron sensitivity
14 AQBQ003 iron sensitivity
15 AQBC104 leaf angle
16 AQBQ002 iron sensitivity
17 AQBC103 leaf angle
18 AQBC101 leaf angle
19 AQBC102 leaf angle
20 AQG019 harvest index
21 AQG015 1000-seed weight
22 AQEA173 days to heading
23 AQEA172 days to heading
24 AQEA171 days to heading
25 AQEA170 days to heading
26 AQEA169 days to heading
27 AQEA167 days to heading
28 AQEA168 days to heading
29 AQEA166 days to heading
30 AQEA165 days to heading
31 AQEA164 days to heading
32 AQEA163 days to heading
33 AQDV016 harvest index
34 AQDV055 1000-seed weight
35 AQDV002 biomass yield
36 AQB009 gel consistency
37 AQA006 tiller number
38 AQB002 breakdown viscosity
39 AQFE068 100-grain weight
40 AQED027 panicle number
41 AQFE067 100-grain weight
42 DQC3 root number
43 AQD016 leaf drying
44 AQO077 root number
45 AQC003 root number
46 AQCU208 leaf length
47 AQCU038 spikelet number
48 AQCU180 days to heading
49 AQCE023 primary branch length
50 AQGB033 grain width
51 CQE5 leaf height
52 AQGI250 total biomass yield
53 AQGI255 total biomass yield
54 AQGI070 root dry weight
55 AQCY031 1000-seed weight
56 AQAG025 grain number
57 AQAE013 plant height
58 AQAB074 spikelet number
59 AQAB048 spikelet number
60 AQFE103 grain shattering
61 AQED042 1000-seed weight
62 AQED041 1000-seed weight
63 CQAS7 spikelet density
64 CQAS6 spikelet number
65 CQAS5 panicle number
66 CQAS4 panicle length
67 CQAS3 days to maturity
68 AQEE013 head rice
69 AQED026 panicle number
70 AQEP001 seedling vigor
71 CQAQ3 plant height
72 CQAX15 plant height
73 CQAX1 plant height
74 CQAV1 osmotic adjustment capacity
75 AQFE094 plant height
76 AQFE093 plant height
77 AQCN022 rice yellow mottle virus resistance
78 AQCN021 rice yellow mottle virus resistance
79 AQCN020 rice yellow mottle virus resistance
80 AQCN019 rice yellow mottle virus resistance
81 AQCN018 rice yellow mottle virus resistance
82 AQCN017 rice yellow mottle virus resistance
83 AQCN016 rice yellow mottle virus resistance
84 AQCN002 tiller number
85 AQCN003 days to heading
86 AQCN001 plant height
87 AQY005 plant height
88 AQY001 plant height
89 AQJ011 grain yield
90 CQAX30 plant height
91 CQX5 culm length
92 AQBV009 leaf angle
93 CQN1 nadh-dependent glutamate synthase content
94 CQN4 soluble protein content
95 AQCS004 ultraviolet-b resistance
96 AQED013 plant height
97 AQED012 plant height
98 AQBK040 seed number
99 AQCS001 ultraviolet-b resistance
100 CQN49 spikelet number
101 CQN3 soluble protein content
102 CQE3 plant height
103 CQE2 plant height

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Yamada Nana; Theerawitaya Cattarin; Cha-Um Suriyan; Kirdmanee Chalermpol; Takabe Teruhiro; Expression and functional analysis of putative vacuolar Ca(2+)-transporters (CAXs and ACAs) in roots of salt tolerant and sensitive rice cultivars. Protoplasma 2014:
PMID [24482191]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India