Rice gene details
Searching for LOC_Os01g72370 [helix-loop-helix DNA-binding domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g72370.1 249 69 121 PF00010.18 HLH
2 LOC_Os01g72370.2 249 69 121 PF00010.18 HLH
3 LOC_Os01g72370.3 248 69 120 PF00010.18 HLH
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  13
N22InfloresenceFC
  2
N22 Root FC
  -24
IR64 Flag-leaf FC
  -13
IR64InfloresenceFC
  2
IR64 Root FC
  -5

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016563 transcription activator activity  
2 GO:0003677 DNA binding (RGAP)
3 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006351 "transcription, DNA-dependent"  
2 GO:0009628 response to abiotic stimulus  
3 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid  
4 GO:0010039 response to iron ion  
5 GO:0010106 cellular response to iron ion starvation  
6 GO:0010468 regulation of gene expression  
7 GO:0006950 response to stress (RGAP)
8 GO:0009628 response to abiotic stimulus (RGAP)
9 GO:0009058 biosynthetic process (RGAP)
10 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007242 iron nutrient regimen (+)
2 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
3 MCE:1000143 iron deficiency treatment (+)
4 MCE:1000176 silver thiosulphate regimen (+)
5 MCE:1000177 cobalt chloride regimen (CoCl2) (+)
6 MCE:1000182 iron fertilizer regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQDM003 spikelet sterility
2 AQQ025 seed weight
3 AQHR007 tiller number
4 AQGI199 total biomass yield
5 AQGI190 total biomass yield
6 AQGI156 biomass yield
7 AQGI109 biomass yield
8 AQGI099 biomass yield
9 AQFW171 spikelet number
10 AQFW119 spikelet fertility
11 AQFW071 days to heading
12 AQCU192 plant height
13 AQFW001 days to heading
14 AQCU112 days to heading
15 AQAG014 tiller number
16 AQAG008 tiller number
17 AQAC046 seed weight
18 AQAC017 biomass yield
19 AQAC009 total biomass yield
20 CQAW1 root number
21 AQFD016 tiller bud dormancy
22 AQEP002 seedling vigor
23 DQC3 root number
24 AQD016 leaf drying
25 AQO077 root number
26 AQC003 root number
27 AQGB033 grain width
28 CQE5 leaf height
29 CQAS7 spikelet density
30 CQAS6 spikelet number
31 CQAS5 panicle number
32 CQAS4 panicle length
33 CQAS3 days to maturity
34 AQEP001 seedling vigor
35 CQN1 nadh-dependent glutamate synthase content
36 CQN4 soluble protein content
37 AQCS004 ultraviolet-b resistance
38 AQBK040 seed number
39 AQCS001 ultraviolet-b resistance
40 CQN49 spikelet number
41 CQN3 soluble protein content
42 CQE3 plant height
43 CQE2 plant height

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0001053 3 leaf fully expanded (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0006339 juvenile leaf (+)
2 PO:0009005 root (+)
3 PO:0009006 shoot system (+)
4 PO:0009025 vascular leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000071 2-deoxymugineic acid content (+)
2 TO:0000019 seedling height (+)
3 TO:0000078 root dry weight (+)
4 TO:0000495 chlorophyll content (+)
5 TO:0000552 shoot dry weight (+)
6 TO:0020089 iron content (+)
7 TO:0020090 zinc content (+)
8 TO:0020091 manganese content (+)
9 TO:0020092 copper content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Pereira Margarida P; Santos Carla; Gomes Ana; Vasconcelos Marta W; Cultivar variability of iron uptake mechanisms in rice (Oryza sativa L.). Plant physiology and biochemistry : PPB / Societe francaise de physiologie vegetale 2014:85C
PMID [25394797]


Xu Yanxia; Zhang Saina; Guo Haipeng; Wang Suikang; Xu Ligen; Li Chuanyou; Qian Qian; Chen Fan; Geisler Markus; Qi Yanhua; Jiang De An; OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.). The Plant journal : for cell and molecular biology 2014:79
PMID [24798203]


Wu Jiaojiao; Wang Chuang; Zheng Luqing; Wang Lu; Chen Yunlong; Whelan James; Shou Huixia; Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa. Journal of Experimental Botany 2011:62
PMID [21112958]


Kobayashi Takanori; Ogo Yuko; Aung May Sann; Nozoye Tomoko; Itai Reiko Nakanishi; Nakanishi Hiromi; Yamakawa Takashi; Nishizawa Naoko K; The spatial expression and regulation of transcription factors IDEF1 and IDEF2. Annals of Botany 2010:105
PMID [20197292]


Zheng Luqing; Ying Yinghui; Wang Lu; Wang Fang; Whelan James; Shou Huixia; Identification of a novel iron regulated basic helix-loop-helix protein involved in Fe homeostasis in Oryza sativa. BMC Plant Biology 2010:10
PMID [20699001]


Sperotto Raul A; Ricachenevsky Felipe K; Duarte Guilherme L; Boff Tatiana; Lopes Karina L; Sperb Edilena R; Grusak Michael A; Fett Janette Palma; Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor. Planta 2009:230
PMID [19697058]


Ogo Yuko; Itai Reiko Nakanishi; Nakanishi Hiromi; Kobayashi Takanori; Takahashi Michiko; Mori Satoshi; Nishizawa Naoko K; The rice bHLH protein OsIRO2 is an essential regulator of the genes involved in Fe uptake under Fe-deficient conditions. The Plant Journal 2007:51
PMID [17559517]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India