Rice gene details
Searching for LOC_Os01g73234 [thioredoxin, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g73234.1 169 60 163 PF00085.12 Thioredoxin
2 LOC_Os01g73234.2 169 60 163 PF00085.12 Thioredoxin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  1
N22 Root FC
  2
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
2 GO:0003674 molecular_function (RGAP)
3 GO:0030234 enzyme regulator activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0019725 cellular homeostasis (RGAP)
Cellular component
Not found
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007069 gibberellic acid regimen (-)
2 EO:0007196 light regimen (-)
3 EO:0007204 1-naphthaleneacetic acid (-)
4 EO:0007290 kinetin regimen (-)
5 MCE:1000203 dark regimen (-)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQF3 soluble protein content
2 CQE4 plant height
3 AQEO004 spikelet fertility
4 AQDM003 spikelet sterility
5 AQQ025 seed weight
6 AQHR007 tiller number
7 AQGI199 total biomass yield
8 AQGI190 total biomass yield
9 AQGI156 biomass yield
10 AQGI109 biomass yield
11 AQGI099 biomass yield
12 AQFW171 spikelet number
13 AQFW119 spikelet fertility
14 AQFW071 days to heading
15 AQCU192 plant height
16 AQFW001 days to heading
17 AQCU112 days to heading
18 AQAG014 tiller number
19 AQAG008 tiller number
20 AQAC046 seed weight
21 AQAC017 biomass yield
22 AQAC009 total biomass yield
23 AQEP002 seedling vigor
24 AQGB033 grain width
25 AQEP001 seedling vigor
26 AQBK040 seed number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (-)
2 MCP:1000110 1 day pre-heading stage (+)
3 MCP:1000136 5 days pre-heading stage (+)
4 MCP:1000194 inflorescence 4-5cm stage (+)
5 MCP:1000201 14 days post-heading stage (-)
6 MCP:1000250 inflorescenece secondary branch primordium differentiation stage (+)
7 MCP:1000489 3 days post-anthesis stage (-)
8 MCP:1000518 seedling development stage (-)
9 PO:0007015 radicle emergence (-)
10 PO:0007022 imbibition (-)
11 PO:0007041 inflorescence emergence from flag leaf sheath (+)
12 PO:0007071 2.02 main shoot and axillary shoots visible at two nodes (+)
13 PO:0007106 LP.03 three leaves visible (-)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000001 embryo proper (-)
2 PO:0005052 plant callus (-)
3 PO:0006000 Poaceae hull (+)
4 PO:0009005 root (+)
5 PO:0009006 shoot system (+)
6 PO:0009010 seed (-)
7 PO:0009025 vascular leaf (+)
8 PO:0009029 stamen (+)
9 PO:0009047 stem (+)
10 PO:0009049 inflorescence (+)
11 PO:0009051 spikelet (-)
12 PO:0020031 radicle (-)
13 PO:0020032 plumule (-)
14 PO:0020103 flag leaf (+)
15 PO:0020104 leaf sheath (+)
16 PO:0025034 leaf (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nuruzzaman Mohammed; Gupta Madhur; Zhang Chengjun; Wang Lei; Xie Weibo; Xiong Lizhong; Zhang Qifa; Lian Xingming; Sequence and expression analysis of the thioredoxin protein gene family in rice. Molecular genetics and genomics 2008:280
PMID [18491141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India