Rice gene details
Searching for LOC_Os01g74110 [metal cation transporter, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g74110.1 353 57 349 PF02535.14 Zip
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -4
N22 Root FC
  -10
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  2
IR64 Root FC
  -3

Functional details
Molecular Function
Not found
1 GO:0016740 transferase activity (RGAP)
2 GO:0005215 transporter activity (RGAP)
Biological process
Not found
1 GO:0006810 transport (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0008152 metabolic process (RGAP)
Cellular component
Not found
1 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000173 cadmium nutrient regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQF3 soluble protein content
2 CQE4 plant height
3 AQEO004 spikelet fertility
4 AQDM003 spikelet sterility
5 AQQ025 seed weight
6 AQHR007 tiller number
7 AQGI199 total biomass yield
8 AQGI190 total biomass yield
9 AQGI156 biomass yield
10 AQGI109 biomass yield
11 AQGI099 biomass yield
12 AQFW171 spikelet number
13 AQFW119 spikelet fertility
14 AQFW071 days to heading
15 AQCU192 plant height
16 AQFW001 days to heading
17 AQCU112 days to heading
18 AQAG014 tiller number
19 AQAG008 tiller number
20 AQAC046 seed weight
21 AQAC017 biomass yield
22 AQAC009 total biomass yield
23 AQEP002 seedling vigor
24 AQGB033 grain width
25 AQEP001 seedling vigor
26 AQBK040 seed number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007010 6 ripening (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000315 second leaf from base (+)
2 PO:0009005 root (+)
3 PO:0020103 flag leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Sasaki Akimasa; Yamaji Naoki; Ma Jian Feng; Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice. Journal of experimental botany 2014:65
PMID [25151617]


Narayanan Narayanan N; Vasconcelos Marta W; Grusak Michael A; Expression profiling of Oryza sativa metal homeostasis genes in different rice cultivars using a cDNA macroarray. Plant Physiology and Biochemistry 2007:45
PMID [17468002]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India