Rice gene details
Searching for LOC_Os01g74410 [MYB family transcription factor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os01g74410.1 277 58 105 PF00249.23 Myb_DNA-binding
2 LOC_Os01g74410.1 277 111 156 PF00249.23 Myb_DNA-binding
3 LOC_Os01g74410.2 211 45 90 PF00249.23 Myb_DNA-binding
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  1
N22 Root FC
  3
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  2
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0001071 nucleic acid binding transcription factor activity  
2 GO:0003677 DNA binding (RGAP)
3 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006970 response to osmotic stress  
2 GO:0006979 response to oxidative stress  
3 GO:0009409 response to cold  
4 GO:0009414 response to water deprivation  
5 GO:0009651 response to salt stress  
6 GO:0009737 response to abscisic acid stimulus  
7 GO:0010555 response to mannitol stimulus  
8 GO:0042538 hyperosmotic salinity response  
9 GO:0008150 biological_process (RGAP)
10 GO:0009058 biosynthetic process (RGAP)
11 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  
2 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007174 cold temperature regimen (+)
4 EO:0007383 watering regimen (+)
5 EO:0007404 drought environment (+)
6 EO:0007415 hydrogen peroxide (+)
7 MCE:1000016 polyethylene glycol (PEG) treatment (+)
8 MCE:1000044 mannitol (+)
9 MCE:1000069 dessication/dehydration stress (+)
10 MCE:1000286 recovery treatment from drought stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQF3 soluble protein content
2 CQE4 plant height

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (+)
2 MCP:1000518 seedling development stage (+)
3 MCP:1000521 mature plant stage (+)
4 PO:0007130 B reproductive growth (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
3 PO:0009010 seed (+)
4 PO:0009047 stem (+)
5 PO:0009049 inflorescence (+)
6 PO:0020104 leaf sheath (+)
7 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000012 survival rate (+)
2 MCT:1000037 malondialdehyde (MDA) content (+)
3 MCT:1000039 water loss (+)
4 MCT:1000057 relative fresh weight (+)
5 MCT:1000582 relative seedling height (+)
6 TO:0000430 germination rate (+)
7 TO:0002667 abscisic acid content (+)
8 TO:0006002 proline content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Xiong Haiyan; Li Jinjie; Liu Pengli; Duan Junzhi; Zhao Yan; Guo Xiao; Li Yang; Zhang Hongliang; Ali Jauhar; Li Zichao; Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice. PloS one 2014:9
PMID [24667379]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India