Rice gene details
Searching for LOC_Os02g02190 [transporter, major facilitator family, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g02190.1 534 69 428 PF07690.8 MFS_1
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
 
N22 Root FC
  -43
IR64 Flag-leaf FC
 
IR64InfloresenceFC
 
IR64 Root FC
  -4

Functional details
Molecular Function
Not found
1 GO:0005215 transporter activity (RGAP)
Biological process
Not found
1 GO:0006810 transport (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0009791 post-embryonic development (RGAP)
4 GO:0008150 biological_process (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007171 pH regimen (+)
2 MCE:1000328 2-deoxymugineic acid (DMA) (+)
3 MCE:1000329 ethylenediaminetetraacetic acid (EDTA) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQAY002 aluminum sensitivity
2 CQN31 leaf senescence
3 CQN56 spikelet number
4 CQF4 leaf nitrogen content
5 AQCW007 chlorophyll content
6 AQFJ064 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Araki Ryoichi; Kousaka Kayoko; Namba Kosuke; Murata Yoshiko; Murata Jun; 2'-Deoxymugineic acid promotes growth of rice (Oryza sativa L.) by orchestrating iron and nitrate uptake processes under high pH conditions. The Plant journal : for cell and molecular biology 2015:81
PMID [25393516]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India