Rice gene details
Searching for LOC_Os02g02240 [expressed protein ]

Basic information [Interpro DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Interpro ID Domain Name
1 LOC_Os02g02240.1 485 17 27 seg
2 LOC_Os02g02240.1 485 55 66 seg
3 LOC_Os02g02240.1 485 314 324 seg
4 LOC_Os02g02240.1 485 326 336 seg
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -1
N22 Root FC
  -1
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
  3

Functional details
Molecular Function
S. No. GO Id GO Description
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009651 response to salt stress  
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007187 salicylic acid regimen (+)
3 EO:0007319 warm/hot air temperature regimen (+)
4 EO:0007332 cold air temperature regimen (+)
5 MCE:1000016 polyethylene glycol (PEG) treatment (+)
6 MCE:1000280 recovery treatment from heat stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQAY002 aluminum sensitivity
2 CQN31 leaf senescence
3 CQN56 spikelet number
4 CQF4 leaf nitrogen content
5 AQCW007 chlorophyll content
6 AQFJ064 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000520 young inflorescence stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
3 PO:0009047 stem (+)
4 PO:0009049 inflorescence (+)
5 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Wang Lan; Shen Rongxin; Chen Le-Tian; Liu Yao-Guang; Characterization of a novel DUF1618 gene family in rice. Journal of integrative plant biology 2014:56
PMID [24237627]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India