Rice gene details
Searching for LOC_Os02g02400 [catalase isozyme A, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g02400.1 493 18 401 PF00199.11 Catalase
2 LOC_Os02g02400.1 493 409 487 PF06628.4 Catalase-rel
3 LOC_Os02g02400.2 489 18 401 PF00199.11 Catalase
4 LOC_Os02g02400.2 489 409 474 PF06628.4 Catalase-rel
5 LOC_Os02g02400.3 285 18 285 PF00199.11 Catalase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  3
N22InfloresenceFC
  -2
N22 Root FC
  5
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  2
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005488 binding (RGAP)
2 GO:0003824 catalytic activity (RGAP)
3 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009414 response to water deprivation  
3 GO:0009646 response to absence of light  
4 GO:0010272 response to silver ion  
5 GO:0046688 response to copper ion  
6 GO:0009991 response to extracellular stimulus (RGAP)
7 GO:0007154 cell communication (RGAP)
8 GO:0006950 response to stress (RGAP)
9 GO:0009628 response to abiotic stimulus (RGAP)
10 GO:0008152 metabolic process (RGAP)
11 GO:0009719 response to endogenous stimulus (RGAP)
12 GO:0008150 biological_process (RGAP)
13 GO:0019725 cellular homeostasis (RGAP)
14 GO:0008219 cell death (RGAP)
15 GO:0009056 catabolic process (RGAP)
16 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005777 peroxisome (RGAP)
2 GO:0005618 cell wall (RGAP)
3 GO:0005739 mitochondrion (RGAP)
4 GO:0009536 plastid (RGAP)
5 GO:0005840 ribosome (RGAP)
6 GO:0005829 cytosol (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007198 water environment (+)
4 EO:0007261 copper nutrient regimen (+)
5 EO:0007270 continuous dark (no light) regimen (+)
6 EO:0007415 hydrogen peroxide (+)
7 MCE:1000016 polyethylene glycol (PEG) treatment (+)
8 MCE:1000091 methyl viologen/paraquat (+)
9 MCE:1000226 panhematin (hemin) (+)
10 MCE:1000227 carbon monoxide regimen (+)
11 MCE:1000294 ammonium chloride (NH4) (+)
12 MCE:1000317 tungstate (+)
13 MCE:1000318 Nordihydroguaiaretic acid (NDGA) (+)
14 MCE:1000340 silver nanoparticles (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 DETOX1-PWY removal of superoxide radicals
2 PWY66-162 oxidative ethanol degradation III

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCU062 plant height
2 CQAS22 seed set percent
3 AQAY002 aluminum sensitivity
4 CQN31 leaf senescence
5 CQN56 spikelet number
6 CQF4 leaf nitrogen content
7 AQCW007 chlorophyll content
8 AQFJ064 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007022 imbibition (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009006 shoot system (+)
5 PO:0009010 seed (+)
6 PO:0009025 vascular leaf (+)
7 PO:0020039 leaf lamina (+)
8 PO:0020104 leaf sheath (+)
9 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Xie Yanjie; Mao Yu; Xu Sheng; Zhou Heng; Duan Xingliang; Cui Weiti; Zhang Jing; Xu Guohua; Heme-heme oxygenase 1 system is involved in ammonium tolerance by regulating antioxidant defence in Oryza sativa. Plant, cell & environment 2015:38
PMID [24905845]


Liu Citao; Mao Bigang; Ou Shujun; Wang Wei; Liu Linchuan; Wu Yanbin; Chu Chengcai; Wang Xiping; OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice. Plant molecular biology 2014:84
PMID [23918260]


Nair Prakash M Gopalakrishnan; Chung Ill Min; Physiological and molecular level effects of silver nanoparticles exposure in rice (Oryza sativa L.) seedlings. Chemosphere 2014:112
PMID [25048895]


Ye Nenghui; Li Haoxuan; Zhu Guohui; Liu Yinggao; Liu Rui; Xu Weifeng; Jing Yu; Peng Xinxiang; Zhang Jianhua; Copper Suppresses Abscisic Acid Catabolism and Catalase Activity and Inhibits Seed Germination of Rice. Plant & cell physiology 2014:
PMID [25273891]


Xu Sheng; Wang Lijuan; Zhang Bo; Han Bin; Xie Yanjie; Yang Jie; Zhong Weigong; Chen Huiping; Wang Ren; Wang Ning; Cui Weiti; Shen Wenbiao; RNAi knockdown of rice SE5 gene is sensitive to the herbicide methyl viologen by the down-regulation of antioxidant defense. Plant Molecular Biology 2012:
PMID [22829206]


Fukao Takeshi; Yeung Elaine; Bailey-Serres Julia; The Submergence Tolerance Regulator SUB1A Mediates Crosstalk between Submergence and Drought Tolerance in Rice. The Plant Cell 2011:23
PMID [21239643]


Ye Nenghui; Zhu Guohui; Liu Yinggao; Li Yingxuan; Zhang Jianhua; ABA controls H₂O₂ accumulation through the induction of OsCATB in rice leaves under water stress. Plant & cell physiology 2011:52
PMID [21398647]


Diédhiou Calliste J; Popova Olga V; Dietz Karl-Josef; Golldack Dortje; The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice. BMC Plant Biology 2008:8
PMID [18442365]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India