Rice gene details
Searching for LOC_Os02g02890 [peptidyl-prolyl cis-trans isomerase, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g02890.1 173 5 171 PF00160.13 Pro_isomerase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  2
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003755 peptidyl-prolyl cis-trans isomerase activity  
2 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009269 response to desiccation  
2 GO:0009408 response to heat  
3 GO:0009414 response to water deprivation  
4 GO:0009651 response to salt stress  
5 GO:0009737 response to abscisic acid stimulus  
6 GO:0010286 heat acclimation  
7 GO:0042538 hyperosmotic salinity response  
8 GO:0019538 protein metabolic process (RGAP)
9 GO:0009987 cellular process (RGAP)
10 GO:0006464 protein modification process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  
2 GO:0005829 cytosol  
3 GO:0005829 cytosol (RGAP)
4 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007173 warm/hot temperature regimen (+)
4 EO:0007204 1-naphthaleneacetic acid (+)
5 EO:0007332 cold air temperature regimen (+)
6 MCE:1000016 polyethylene glycol (PEG) treatment (+)
7 MCE:1000069 dessication/dehydration stress (+)
8 MCE:1000128 cyclosporin A (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCE034 primary branch
2 AQCU062 plant height
3 CQAS22 seed set percent
4 AQAY002 aluminum sensitivity
5 CQN31 leaf senescence
6 CQN56 spikelet number
7 CQF4 leaf nitrogen content
8 AQCW007 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007041 inflorescence emergence from flag leaf sheath (+)
3 PO:0007073 2 formation of axillary shoot (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000084 upper shoot (+)
2 MCP:1000085 lower shoot (+)
3 MCP:1000100 upper leaf (+)
4 MCP:1000101 middle leaf (+)
5 MCP:1000104 middle stem (+)
6 MCP:1000402 leaf region 1 cm from shoot base (+)
7 MCP:1000404 leaf region 2-3 cm above shoot base (+)
8 PO:0000005 cultured plant cell (+)
9 PO:0008037 seedling (+)
10 PO:0008039 stem base (+)
11 PO:0009005 root (+)
12 PO:0009006 shoot system (+)
13 PO:0009046 flower (+)
14 PO:0009047 stem (+)
15 PO:0009049 inflorescence (+)
16 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000015 photochemical efficiency (+)
2 MCT:1000034 superoxide dismutase (SOD) activity (+)
3 MCT:1000037 malondialdehyde (MDA) content (+)
4 MCT:1000038 catalase (CAT) activity (+)
5 MCT:1000044 ascorbate peroxidase activity (APX) (+)
6 MCT:1000088 peptidyl prolyl cis-trans isomerase (PPIase) activity (+)
7 MCT:1000456 root hair number (+)
8 TO:0000605 hydrogen peroxide content (+)
9 TO:0000639 seed fertility (+)
10 TO:0001012 lateral root length (+)
11 TO:0001013 lateral root number (+)
12 TO:0006060 leaf chlorosis (+)

Physical interaction details
Interaction type: protein-protein
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

 Amino acid involved in interaction

Id

Domain name/N or C term

 Amino acid involved in interaction
1 LOC_Os02g02890 - --- LOC_Os01g43540 - --- Protein-protein interaction analysis : Yeast two-hybrid analysis
2 LOC_Os02g02890 - --- LOC_Os01g43540 - --- Protein-protein interaction analysis : Pull Down Assay
3 LOC_Os02g02890 - --- LOC_Os01g43540 - --- Protein-protein interaction analysis : Firefly Luciferase Complementation Imaging (LCI) analysis
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Kang Bo; Zhang Zhongchen; Wang Lingling; Zheng Libin; Mao Weihua; Li Meifei; Wu Yunrong; Wu Ping; Mo Xiaorong; OsCYP2, a chaperone involved in AUX/IAA degradation, plays crucial roles in rice lateral root initiation. The Plant journal 2013:
PMID [23289750]


2  Ruan Song-Lin; Ma Hua-Sheng; Wang Shi-Heng; Fu Ya-Ping; Xin Ya; Liu Wen-Zhen; Wang Fang; Tong Jian-Xin; Wang Shu-Zhen; Chen Hui-Zhe; Proteomic identification of OsCYP2, a rice cyclophilin that confers salt tolerance in rice (Oryza sativa L.) seedlings when overexpressed. BMC Plant Biology 2011:11
PMID [21324151]


3  Ahn Jun Cheul; Kim Dae-Won; You Young Nim; Seok Min Sook; Park Jeong Mee; Hwang Hyunsik; Kim Beom-Gi; Luan Sheng; Park Hong-Seog; Cho Hye Sun; Classification of rice (Oryza sativa L. Japonica nipponbare) immunophilins (FKBPs, CYPs) and expression patterns under water stress. BMC Plant Biology 2010:10
PMID [21087465]


4  Kumari Sumita; Singh Prabhjeet; Singla-Pareek Sneh L; Pareek Ashwani; Heterologous expression of a salinity and developmentally regulated rice cyclophilin gene (OsCyp2) in E. coli and S. cerevisiae confers tolerance towards multiple abiotic stresses. Molecular biotechnology 2009:42
PMID [19214808]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India