Rice gene details
Searching for LOC_Os02g04630 [sodium/calcium exchanger protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g04630.1 363 102 345 PF01699.16 Na_Ca_ex
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  -2
N22 Root FC
  15
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  -1
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005215 transporter activity (RGAP)
2 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006816 calcium ion transport  
2 GO:0006825 copper ion transport  
3 GO:0006828 manganese ion transport  
4 GO:0006950 response to stress  
5 GO:0009651 response to salt stress  
6 GO:0051592 response to calcium ion  
7 GO:0006810 transport (RGAP)
8 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005773 vacuole (RGAP)
2 GO:0016020 membrane (RGAP)
3 GO:0005623 cell (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 MCE:1000119 calcium chloride regimen (CaCl2) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCE034 primary branch
2 AQCU062 plant height
3 CQAS22 seed set percent
4 CQN31 leaf senescence
5 CQN56 spikelet number
6 CQF4 leaf nitrogen content
7 AQCW007 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Yamada Nana; Theerawitaya Cattarin; Cha-Um Suriyan; Kirdmanee Chalermpol; Takabe Teruhiro; Expression and functional analysis of putative vacuolar Ca(2+)-transporters (CAXs and ACAs) in roots of salt tolerant and sensitive rice cultivars. Protoplasma 2014:
PMID [24482191]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India