Rice gene details
Searching for LOC_Os02g06380 [plant-specific domain TIGR01627 family protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g06380.1 393 233 380 PF04669.5 DUF579
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -6
N22 Root FC
  3
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  3
IR64 Root FC
  3

Functional details
Molecular Function
Not found
1 GO:0003674 molecular_function (RGAP)
Biological process
Not found
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0005975 carbohydrate metabolic process (RGAP)
3 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0005794 Golgi apparatus (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQEI114 leaf senescence
2 AQED001 days to heading
3 CQAS26 yield
4 AQDR009 1000-seed weight
5 AQE024 grain yield per plant
6 AQE001 days to flower
7 AQCU062 plant height
8 CQN31 leaf senescence
9 CQN56 spikelet number
10 CQF4 leaf nitrogen content
11 AQCW007 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Zhang Jie; Liu Xiaoqiang; Li Shuyu; Cheng Zhukuan; Li Chuanyou; The Rice Semi-Dwarf Mutant sd37, Caused by a Mutation in CYP96B4, Plays an Important Role in the Fine-Tuning of Plant Growth. PloS one 2014:9
PMID [24498428]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India