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Searching for LOC_Os02g09420
[cyclase family protein, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os02g09420.1 |
275 |
60 |
260 |
PF04199.5 |
Cyclase |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Biological process
Cellular component
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Environment details
Metabolic Pathway details
QTL details
S. No. |
QTL Id |
QTL Associated Trait |
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1 |
AQFP026 |
culm thickness |
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2 |
AQFP004 |
culm thickness |
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3 |
AQDK017 |
1000-seed weight |
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4 |
AQFW170 |
spikelet number |
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5 |
AQFW102 |
panicle length |
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6 |
AQAP041 |
brown planthopper resistance |
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7 |
CQY1 |
germination speed |
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8 |
AQGB109 |
chalkiness of endosperm |
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9 |
AQGB108 |
chalkiness of endosperm |
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10 |
AQGB084 |
chalkiness of endosperm |
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11 |
AQBK012 |
days to heading |
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12 |
CQAA17 |
relative phosphorus distribution between shoot and root |
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13 |
CQAA16 |
relative phosphorus distribution between shoot and root |
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14 |
AQBK041 |
seed number |
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15 |
AQBK031 |
spikelet number |
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16 |
AQBK025 |
plant height |
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17 |
CQAS26 |
yield |
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18 |
AQDR009 |
1000-seed weight |
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19 |
AQE024 |
grain yield per plant |
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20 |
AQE001 |
days to flower |
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21 |
CQN31 |
leaf senescence |
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22 |
CQN56 |
spikelet number |
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000251 |
pistil/stamen primordium differentiation stage |
(-) |
2 |
MCP:1000520 |
young inflorescence stage |
(-) |
3 |
PO:0007073 |
2 formation of axillary shoot |
(-) |
4 |
PO:0007115 |
LP.04 four leaves visible |
(-) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Qin Yonghua; Shen Xin; Wang Nili; Ding Xipeng; Characterization of a novel cyclase-like gene family involved in controlling stress tolerance in rice. Journal of plant physiology 2015:181
PMID [25974367]
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