Rice gene details
Searching for LOC_Os02g09420 [cyclase family protein, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g09420.1 275 60 260 PF04199.5 Cyclase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  2
N22 Root FC
  2
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
Not found
1 GO:0003674 molecular_function (RGAP)
Biological process
Not found
1 GO:0008150 biological_process (RGAP)
Cellular component
Not found

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQFP026 culm thickness
2 AQFP004 culm thickness
3 AQDK017 1000-seed weight
4 AQFW170 spikelet number
5 AQFW102 panicle length
6 AQAP041 brown planthopper resistance
7 CQY1 germination speed
8 AQGB109 chalkiness of endosperm
9 AQGB108 chalkiness of endosperm
10 AQGB084 chalkiness of endosperm
11 AQBK012 days to heading
12 CQAA17 relative phosphorus distribution between shoot and root
13 CQAA16 relative phosphorus distribution between shoot and root
14 AQBK041 seed number
15 AQBK031 spikelet number
16 AQBK025 plant height
17 CQAS26 yield
18 AQDR009 1000-seed weight
19 AQE024 grain yield per plant
20 AQE001 days to flower
21 CQN31 leaf senescence
22 CQN56 spikelet number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000251 pistil/stamen primordium differentiation stage (-)
2 MCP:1000520 young inflorescence stage (-)
3 PO:0007073 2 formation of axillary shoot (-)
4 PO:0007115 LP.04 four leaves visible (-)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0006012 leaf collar (-)
2 PO:0009005 root (-)
3 PO:0009006 shoot system (-)
4 PO:0009029 stamen (-)
5 PO:0009039 glume (-)
6 PO:0009047 stem (-)
7 PO:0009049 inflorescence (-)
8 PO:0009089 endosperm (-)
9 PO:0020103 flag leaf (-)
10 PO:0020104 leaf sheath (-)
11 PO:0025034 leaf (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Qin Yonghua; Shen Xin; Wang Nili; Ding Xipeng; Characterization of a novel cyclase-like gene family involved in controlling stress tolerance in rice. Journal of plant physiology 2015:181
PMID [25974367]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India