Rice gene details
Searching for LOC_Os02g12790 [GATA zinc finger domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g12790.1 354 178 213 PF00320.19 GATA
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  3
N22InfloresenceFC
  2
N22 Root FC
  4
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005515 protein binding (RGAP)
2 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009416 response to light stimulus  
2 GO:0009735 response to cytokinin stimulus  
3 GO:0009739 response to gibberellin stimulus  
4 GO:0010167 response to nitrate  
5 GO:0019725 cellular homeostasis (RGAP)
6 GO:0007165 signal transduction (RGAP)
7 GO:0008150 biological_process (RGAP)
8 GO:0009058 biosynthetic process (RGAP)
9 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
10 GO:0009628 response to abiotic stimulus (RGAP)
11 GO:0009908 flower development (RGAP)
12 GO:0008152 metabolic process (RGAP)
13 GO:0009791 post-embryonic development (RGAP)
14 GO:0009719 response to endogenous stimulus (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007090 ammonium nitrate regimen (+)
2 EO:0007196 light regimen (+)
3 EO:0007199 long day length regimen (+)
4 EO:0007291 benzyladenine regimen (+)
5 EO:0007406 nitrate regimen (+)
6 MCE:1000203 dark regimen (+)
7 MCE:1000288 GA3 gibberellin (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQAL015 deep root dry weight
2 CQA43 reproductive growth time
3 CQA42 vegetative growth time
4 CQA1 days to heading
5 AQCZ008 seed dormancy
6 CQE8 plant height
7 CQE7 plant height
8 AQDS061 plant height
9 AQDS050 plant height
10 AQDR049 grain number
11 AQDQ020 spikelet fertility
12 AQDQ019 spikelet number
13 AQFW259 spikelet fertility
14 AQCU232 panicle length
15 AQCU222 leaf width
16 AQAP052 brown planthopper resistance
17 AQFP026 culm thickness
18 AQFP004 culm thickness
19 AQGB109 chalkiness of endosperm
20 AQGB108 chalkiness of endosperm
21 AQGB084 chalkiness of endosperm
22 AQBK012 days to heading
23 CQAA17 relative phosphorus distribution between shoot and root
24 CQAA16 relative phosphorus distribution between shoot and root
25 AQBK041 seed number
26 AQBK031 spikelet number
27 AQBK025 plant height
28 CQAS26 yield
29 AQE024 grain yield per plant
30 AQE001 days to flower
31 CQN31 leaf senescence
32 CQN56 spikelet number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000330 pre-anthesis stage (+)
2 MCP:1000518 seedling development stage (+)
3 MCP:1000521 mature plant stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000316 third leaf from base (+)
2 PO:0000003 whole plant (+)
3 PO:0005679 epidermis (+)
4 PO:0006339 juvenile leaf (+)
5 PO:0009005 root (+)
6 PO:0009010 seed (+)
7 PO:0009029 stamen (-)
8 PO:0009030 carpel (-)
9 PO:0009047 stem (+)
10 PO:0009049 inflorescence (+)
11 PO:0020039 leaf lamina (+)
12 PO:0020103 flag leaf (+)
13 PO:0020104 leaf sheath (+)
14 PO:0020139 midvein (+)
15 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000110 starch accumulation (+)
2 MCT:1000426 shrunken seed (+)
3 MCT:1000522 distance between vascular bundles (+)
4 MCT:1000523 flowering tiller number (+)
5 MCT:1000524 chloroplast number (+)
6 MCT:1000525 delayed senescence (+)
7 TO:0000050 inflorescence branching (+)
8 TO:0000128 harvest index (+)
9 TO:0000135 leaf length (+)
10 TO:0000181 seed weight (+)
11 TO:0000207 plant height (+)
12 TO:0000352 plant dry weight (+)
13 TO:0000370 leaf width (+)
14 TO:0000391 seed size (+)
15 TO:0000447 filled grain number (+)
16 TO:0000472 vascular bundle number (+)
17 TO:0000495 chlorophyll content (+)
18 TO:0000625 spikelet density (+)
19 TO:0000696 starch content (+)
20 TO:0002658 starch grain synthesis (+)
21 TO:0002684 plant cell size (+)
22 TO:0002686 cell growth and development trait (+)
23 TO:0002715 chloroplast development trait (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Hudson Darryl; Guevara David R; Hand Andrew J; Xu Zhenhua; Hao Lixin; Zhu Tong; Chen Xi; Bi Yong-Mei; Rothstein Steven J; Rice Cytokinin GATA Transcription Factor 1 Regulates Chloroplast Development and Plant Architecture. Plant physiology 2013:
PMID [23548780]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India