Rice gene details
Searching for LOC_Os02g12890 [cytochrome P450, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g12890.1 549 55 504 PF00067.14 p450
2 LOC_Os02g12890.2 424 17 379 PF00067.14 p450
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  3
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0003674 molecular_function (RGAP)
2 GO:0005488 binding (RGAP)
3 GO:0019825 oxygen binding (RGAP)
4 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0009653 anatomical structure morphogenesis (RGAP)
2 GO:0007275 multicellular organismal development (RGAP)
3 GO:0008152 metabolic process (RGAP)
4 GO:0006810 transport (RGAP)
5 GO:0009058 biosynthetic process (RGAP)
6 GO:0009987 cellular process (RGAP)
7 GO:0019748 secondary metabolic process (RGAP)
8 GO:0006629 lipid metabolic process (RGAP)
Cellular component
Not found
1 GO:0005623 cell (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAH10 seed dormancy
2 AQF109 apiculus hair length
3 AQF094 KClO3 resistance
4 AQAL015 deep root dry weight
5 CQA43 reproductive growth time
6 CQA42 vegetative growth time
7 CQA1 days to heading
8 AQCZ008 seed dormancy
9 CQE8 plant height
10 CQE7 plant height
11 AQDS061 plant height
12 AQDS050 plant height
13 AQDR049 grain number
14 AQDQ020 spikelet fertility
15 AQDQ019 spikelet number
16 AQFW259 spikelet fertility
17 AQCU232 panicle length
18 AQCU222 leaf width
19 AQAP052 brown planthopper resistance
20 AQFP026 culm thickness
21 AQFP004 culm thickness
22 AQGB109 chalkiness of endosperm
23 AQGB108 chalkiness of endosperm
24 AQGB084 chalkiness of endosperm
25 AQBK012 days to heading
26 CQAA17 relative phosphorus distribution between shoot and root
27 CQAA16 relative phosphorus distribution between shoot and root
28 AQBK041 seed number
29 AQBK031 spikelet number
30 AQBK025 plant height
31 CQAS26 yield
32 AQE024 grain yield per plant
33 AQE001 days to flower
34 CQN31 leaf senescence
35 CQN56 spikelet number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Yaish Mahmoud W; El-Kereamy Ashraf; Zhu Tong; Beatty Perrin H; Good Allen G; Bi Yong-Mei; Rothstein Steven J; The APETALA-2-like transcription factor OsAP2-39 controls key interactions between abscisic acid and gibberellin in rice. PLoS genetics 2010:6
PMID [20838584]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India