Rice gene details
Searching for LOC_Os02g15580 [cyclic nucleotide-gated ion channel 1, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g15580.1 499 18 186 PF00520.23 Ion_trans
2 LOC_Os02g15580.1 499 287 387 PF00027.21 cNMP_binding
3 LOC_Os02g15580.2 476 126 388 PF00520.23 Ion_trans
4 LOC_Os02g15580.3 387 126 351 PF00520.23 Ion_trans
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  1
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
2 GO:0005215 transporter activity (RGAP)
3 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009617 response to bacterium  
3 GO:0009723 response to ethylene stimulus  
4 GO:0009733 response to auxin stimulus  
5 GO:0009735 response to cytokinin stimulus  
6 GO:0009737 response to abscisic acid stimulus  
7 GO:0006810 transport (RGAP)
8 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007068 ethylene regimen (+)
2 EO:0007070 indole acetic acid regimen (+)
3 EO:0007105 abscisic acid regimen (+)
4 EO:0007198 water environment (+)
5 EO:0007234 Pseudomonas fuscovaginae (+)
6 EO:0007257 Xanthomonas oryzae pv. oryzae (+)
7 EO:0007290 kinetin regimen (+)
8 EO:0007332 cold air temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQDX004 osmotic adjustment capacity
2 CQN11 soluble protein content
3 CQN10 soluble protein content
4 CQN9 nadh-dependent glutamate synthase content
5 CQN54 spikelet number
6 AQFW189 days to heading
7 AQFW101 panicle length
8 AQFW015 spikelet fertility
9 AQCU231 panicle length
10 CQAS14 plant height
11 CQAS20 spikelet density
12 AQGE032 cooked kernel elongation
13 AQGE001 grain length
14 AQAL015 deep root dry weight
15 AQCZ008 seed dormancy
16 AQDS061 plant height
17 AQDS050 plant height
18 AQDR049 grain number
19 AQDQ020 spikelet fertility
20 AQDQ019 spikelet number
21 AQFP026 culm thickness
22 AQFP004 culm thickness
23 AQGB109 chalkiness of endosperm
24 AQGB108 chalkiness of endosperm
25 AQGB084 chalkiness of endosperm
26 AQBK012 days to heading
27 CQAA17 relative phosphorus distribution between shoot and root
28 CQAA16 relative phosphorus distribution between shoot and root
29 AQBK041 seed number
30 AQBK031 spikelet number
31 AQBK025 plant height
32 AQE024 grain yield per plant
33 AQE001 days to flower
34 CQN31 leaf senescence
35 CQN56 spikelet number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nawaz Zarqa; Kakar Kaleem Ullah; Saand Mumtaz A; Shu Qing-Yao; Cyclic nucleotide-gated ion channel gene family in rice, identification, characterization and experimental analysis of expression response to plant hormones, biotic and abiotic stresses. BMC genomics 2014:15
PMID [25280591]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India