Rice gene details
Searching for LOC_Os02g15760 [helix-loop-helix DNA-binding domain containing protein ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g15760.1 416 130 181 PF00010.18 HLH
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
 
N22 Root FC
  1
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  -1
IR64 Root FC
  1

Functional details
Molecular Function
Not found
1 GO:0003677 DNA binding (RGAP)
2 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
Not found
1 GO:0009791 post-embryonic development (RGAP)
2 GO:0009058 biosynthetic process (RGAP)
3 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
Not found
1 GO:0005634 nucleus (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQAM037 rhizome dry weight
2 AQAM036 rhizome branching angle
3 AQDX004 osmotic adjustment capacity
4 CQN11 soluble protein content
5 CQN10 soluble protein content
6 CQN9 nadh-dependent glutamate synthase content
7 CQN54 spikelet number
8 AQFW189 days to heading
9 AQFW101 panicle length
10 AQFW015 spikelet fertility
11 AQCU231 panicle length
12 CQAS14 plant height
13 CQAS20 spikelet density
14 AQGE032 cooked kernel elongation
15 AQGE001 grain length
16 AQAL015 deep root dry weight
17 AQCZ008 seed dormancy
18 AQDS061 plant height
19 AQDS050 plant height
20 AQDR049 grain number
21 AQDQ020 spikelet fertility
22 AQDQ019 spikelet number
23 AQFP026 culm thickness
24 AQFP004 culm thickness
25 AQGB109 chalkiness of endosperm
26 AQGB108 chalkiness of endosperm
27 AQGB084 chalkiness of endosperm
28 AQBK012 days to heading
29 CQAA17 relative phosphorus distribution between shoot and root
30 CQAA16 relative phosphorus distribution between shoot and root
31 AQBK041 seed number
32 AQBK031 spikelet number
33 AQBK025 plant height
34 AQE024 grain yield per plant
35 AQE001 days to flower
36 CQN31 leaf senescence
37 CQN56 spikelet number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007065 LP.05 five leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India