Rice gene details
Searching for LOC_Os02g17700 [pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g17700.1 500 38 410 PF07992.6 Pyr_redox_2
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  4
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003674 molecular_function (RGAP)
2 GO:0003824 catalytic activity (RGAP)
3 GO:0005488 binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0006979 response to oxidative stress  
3 GO:0009412 response to heavy metal  
4 GO:0046686 response to cadmium ion  
5 GO:0008152 metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007223 cadmium chloride (+)
2 MCE:1000008 methyl viologen (MV) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQED028 panicle number
2 AQCI005 phosphorus sensitivity
3 AQCI001 phosphorus sensitivity
4 AQAU001 brown planthopper resistance
5 CQAL23 grain length
6 AQAM037 rhizome dry weight
7 AQAM036 rhizome branching angle
8 AQDX004 osmotic adjustment capacity
9 CQN11 soluble protein content
10 CQN10 soluble protein content
11 CQN9 nadh-dependent glutamate synthase content
12 CQN54 spikelet number
13 AQFW189 days to heading
14 AQFW101 panicle length
15 AQFW015 spikelet fertility
16 AQCU231 panicle length
17 CQAS14 plant height
18 CQAS20 spikelet density
19 AQAL015 deep root dry weight
20 AQDS061 plant height
21 AQDS050 plant height
22 AQDR049 grain number
23 AQDQ020 spikelet fertility
24 AQDQ019 spikelet number
25 AQFP026 culm thickness
26 AQFP004 culm thickness
27 AQGB109 chalkiness of endosperm
28 AQGB108 chalkiness of endosperm
29 AQGB084 chalkiness of endosperm
30 AQBK012 days to heading
31 CQAA17 relative phosphorus distribution between shoot and root
32 CQAA16 relative phosphorus distribution between shoot and root
33 AQBK041 seed number
34 AQBK031 spikelet number
35 AQBK025 plant height
36 AQE024 grain yield per plant
37 AQE001 days to flower

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0025034 leaf (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India