Rice gene details
Searching for LOC_Os02g17780 [ent-kaurene synthase, chloroplast precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g17780.1 868 314 536 PF01397.13 Terpene_synth
2 LOC_Os02g17780.1 868 562 636 PF03936.8 Terpene_synth_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  -3
N22 Root FC
  -4
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  -1
IR64 Root FC
 

Functional details
Molecular Function
Not found
1 GO:0005488 binding (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0009719 response to endogenous stimulus (RGAP)
2 GO:0007165 signal transduction (RGAP)
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0009987 cellular process (RGAP)
5 GO:0006629 lipid metabolic process (RGAP)
Cellular component
Not found
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007069 gibberellic acid regimen (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 TRIGLSYN-PWY triacylglycerol biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 AQED028 panicle number
2 AQCI005 phosphorus sensitivity
3 AQCI001 phosphorus sensitivity
4 AQAU001 brown planthopper resistance
5 CQAL23 grain length
6 AQAM037 rhizome dry weight
7 AQAM036 rhizome branching angle
8 AQDX004 osmotic adjustment capacity
9 CQN11 soluble protein content
10 CQN10 soluble protein content
11 CQN9 nadh-dependent glutamate synthase content
12 CQN54 spikelet number
13 AQFW189 days to heading
14 AQFW101 panicle length
15 AQFW015 spikelet fertility
16 AQCU231 panicle length
17 CQAS14 plant height
18 CQAS20 spikelet density
19 AQAL015 deep root dry weight
20 AQDS061 plant height
21 AQDS050 plant height
22 AQDR049 grain number
23 AQDQ020 spikelet fertility
24 AQDQ019 spikelet number
25 AQFP026 culm thickness
26 AQFP004 culm thickness
27 AQGB109 chalkiness of endosperm
28 AQGB108 chalkiness of endosperm
29 AQGB084 chalkiness of endosperm
30 AQBK012 days to heading
31 CQAA17 relative phosphorus distribution between shoot and root
32 CQAA16 relative phosphorus distribution between shoot and root
33 AQBK041 seed number
34 AQBK031 spikelet number
35 AQBK025 plant height
36 AQE024 grain yield per plant
37 AQE001 days to flower

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007022 imbibition (+)
2 PO:0007115 LP.04 four leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
3 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Wu Jiahe; Zhu Chuanfeng; Pang Jinhuan; Zhang Xiangrong; Yang Chunlin; Xia Guixian; Tian Yingchuan; He Chaozu; OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa. The Plant journal : for cell and molecular biology 2014:80
PMID [25353370]


Li Juan; Jiang Jiafu; Qian Qian; Xu Yunyuan; Zhang Cui; Xiao Jun; Du Cheng; Luo Wei; Zou Guoxing; Chen Mingluan; Huang Yunqing; Feng Yuqi; Cheng Zhukuan; Yuan Ming; Chong Kang; Mutation of Rice BC12/GDD1, Which Encodes a Kinesin-Like Protein That Binds to a GA Biosynthesis Gene Promoter, Leads to Dwarfism with Impaired Cell Elongation. The Plant Cell 2011:23
PMID [21325138]


Qi Weiwei; Sun Fan; Wang Qianjie; Chen Mingluan; Huang Yunqing; Feng Yu-Qi; Luo Xiaojin; Yang Jinshui; Rice ethylene-response AP2/ERF factor OsEATB restricts internode elongation by down-regulating a gibberellin biosynthetic gene. Plant Physiology 2011:157
PMID [21753115]


Tanaka Naoki; Matsuoka Makoto; Kitano Hidemi; Asano Takayuki; Kaku Hisatoshi; Komatsu Setsuko; gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack. Plant, Cell & Environment 2006:29
PMID [17080612]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India