Rice gene details
Searching for LOC_Os02g20360 [tyrosine aminotransferase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g20360.1 495 112 478 PF00155.13 Aminotran_1_2
2 LOC_Os02g20360.2 468 112 338 PF00155.13 Aminotran_1_2
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -5
N22InfloresenceFC
  5
N22 Root FC
  -1
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -1
IR64 Root FC
  -8

Functional details
Molecular Function
Not found
1 GO:0016740 transferase activity (RGAP)
Biological process
Not found
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0008152 metabolic process (RGAP)
Cellular component
Not found
1 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000143 iron deficiency treatment (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 CHLOROPHYLL-SYN chlorophyllide a biosynthesis
2 PHESYN phenylalanine biosynthesis I
3 PWY-5079 phenylalanine degradation III
4 PWY-702 methionine biosynthesis II
5 PWY-801 homocysteine and cysteine interconversion
6 TYRFUMCAT-PWY tyrosine degradation I

QTL details
S. No. QTL Id QTL Associated Trait
1 CQB38 1000-grain weight
2 CQB37 1000-grain weight
3 CQB3 1000-grain weight
4 AQDK016 1000-seed weight
5 AQS005 sheath blight disease resistance
6 AQS001 sheath blight disease resistance
7 AQBP003 gel consistency
8 AQGS026 seed weight
9 AQGS007 panicle number
10 AQAV004 cold tolerance
11 AQAV001 cold tolerance
12 AQHP068 drought tolerance
13 AQHP050 deep root dry weight
14 AQHP038 root dry weight to tiller number ratio
15 AQHP003 root thickness
16 AQCN023 rice yellow mottle virus resistance
17 AQBF002 root volume
18 AQBC038 tiller number
19 AQED028 panicle number
20 AQCI005 phosphorus sensitivity
21 AQCI001 phosphorus sensitivity
22 AQAU001 brown planthopper resistance
23 CQAL23 grain length
24 AQAM037 rhizome dry weight
25 AQAM036 rhizome branching angle
26 AQDX004 osmotic adjustment capacity
27 CQN11 soluble protein content
28 CQN10 soluble protein content
29 CQN9 nadh-dependent glutamate synthase content
30 CQN54 spikelet number
31 AQFW189 days to heading
32 AQFW101 panicle length
33 AQFW015 spikelet fertility
34 AQCU231 panicle length
35 CQAS14 plant height
36 AQAL015 deep root dry weight
37 AQDS061 plant height
38 AQDS050 plant height
39 AQDR049 grain number
40 AQDQ020 spikelet fertility
41 AQDQ019 spikelet number
42 AQFP026 culm thickness
43 AQFP004 culm thickness
44 AQBK012 days to heading
45 CQAA17 relative phosphorus distribution between shoot and root
46 CQAA16 relative phosphorus distribution between shoot and root
47 AQBK041 seed number
48 AQBK031 spikelet number
49 AQBK025 plant height
50 AQE024 grain yield per plant
51 AQE001 days to flower

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Xu Yanxia; Zhang Saina; Guo Haipeng; Wang Suikang; Xu Ligen; Li Chuanyou; Qian Qian; Chen Fan; Geisler Markus; Qi Yanhua; Jiang De An; OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.). The Plant journal : for cell and molecular biology 2014:79
PMID [24798203]


Ogo Yuko; Itai Reiko Nakanishi; Nakanishi Hiromi; Kobayashi Takanori; Takahashi Michiko; Mori Satoshi; Nishizawa Naoko K; The rice bHLH protein OsIRO2 is an essential regulator of the genes involved in Fe uptake under Fe-deficient conditions. The Plant Journal 2007:51
PMID [17559517]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India