Rice gene details
Searching for LOC_Os02g21009 [sodium/calcium exchanger protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g21009.1 451 110 259 PF01699.16 Na_Ca_ex
2 LOC_Os02g21009.1 451 303 436 PF01699.16 Na_Ca_ex
3 LOC_Os02g21009.2 451 110 259 PF01699.16 Na_Ca_ex
4 LOC_Os02g21009.2 451 303 436 PF01699.16 Na_Ca_ex
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
 
N22 Root FC
  1
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  5
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005515 protein binding (RGAP)
2 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0009651 response to salt stress  
3 GO:0006810 transport (RGAP)
4 GO:0009987 cellular process (RGAP)
5 GO:0008150 biological_process (RGAP)
6 GO:0019725 cellular homeostasis (RGAP)
7 GO:0008152 metabolic process (RGAP)
8 GO:0009607 response to biotic stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0005773 vacuole (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQB38 1000-grain weight
2 CQB37 1000-grain weight
3 CQB3 1000-grain weight
4 AQDK016 1000-seed weight
5 AQS005 sheath blight disease resistance
6 AQS001 sheath blight disease resistance
7 AQBP003 gel consistency
8 AQGS026 seed weight
9 AQGS007 panicle number
10 AQHP068 drought tolerance
11 AQHP050 deep root dry weight
12 AQHP038 root dry weight to tiller number ratio
13 AQHP003 root thickness
14 AQCN023 rice yellow mottle virus resistance
15 AQBF002 root volume
16 AQBC038 tiller number
17 AQED028 panicle number
18 AQCI005 phosphorus sensitivity
19 AQCI001 phosphorus sensitivity
20 AQAU001 brown planthopper resistance
21 CQAL23 grain length
22 AQAM037 rhizome dry weight
23 AQAM036 rhizome branching angle
24 AQDX004 osmotic adjustment capacity
25 CQN11 soluble protein content
26 CQN10 soluble protein content
27 CQN9 nadh-dependent glutamate synthase content
28 CQN54 spikelet number
29 AQFW189 days to heading
30 AQFW101 panicle length
31 AQFW015 spikelet fertility
32 AQCU231 panicle length
33 CQAS14 plant height
34 AQAL015 deep root dry weight
35 AQDS061 plant height
36 AQDS050 plant height
37 AQDR049 grain number
38 AQDQ020 spikelet fertility
39 AQDQ019 spikelet number
40 AQFP026 culm thickness
41 AQFP004 culm thickness
42 AQBK012 days to heading
43 CQAA17 relative phosphorus distribution between shoot and root
44 CQAA16 relative phosphorus distribution between shoot and root
45 AQBK041 seed number
46 AQBK031 spikelet number
47 AQBK025 plant height
48 AQE024 grain yield per plant
49 AQE001 days to flower

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Yamada Nana; Theerawitaya Cattarin; Cha-Um Suriyan; Kirdmanee Chalermpol; Takabe Teruhiro; Expression and functional analysis of putative vacuolar Ca(2+)-transporters (CAXs and ACAs) in roots of salt tolerant and sensitive rice cultivars. Protoplasma 2014:
PMID [24482191]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India