Rice gene details
Searching for LOC_Os02g30620 [dnaJ domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g30620.1 735 72 133 PF00226.23 DnaJ
2 LOC_Os02g30620.2 735 72 133 PF00226.23 DnaJ
3 LOC_Os02g30620.3 735 72 133 PF00226.23 DnaJ
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  1
N22 Root FC
  2
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
  -1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0019538 protein metabolic process (RGAP)
3 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007173 warm/hot temperature regimen (+)
2 EO:0007175 temperature environment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN55 spikelet number
2 CQN46 panicle weight
3 CQN8 glutamine synthetase content
4 CQN30 leaf senescence
5 CQAX28 plant height
6 CQAX14 plant height
7 AQDQ021 panicle length
8 DQC5 penetrated root number
9 DQC12 penetrated to total root ratio
10 AQDQ022 panicle length
11 AQDQ018 grain yield per plant
12 AQDQ017 spikelet number
13 AQDQ016 filled grain number
14 AQDQ015 panicle number
15 AQEP009 seedling vigor
16 CQQ29 plant height
17 CQQ19 root length
18 CQQ14 root dry weight to tiller number ratio
19 CQAI37 root volume
20 CQAI30 root number
21 CQAI22 root length
22 CQAI14 tiller number
23 AQEA179 days to heading
24 AQEA178 days to heading
25 AQEA177 days to heading
26 AQEA176 days to heading
27 AQEA175 days to heading
28 AQEA174 days to heading
29 AQBE051 tiller number
30 AQBE050 tiller number
31 AQBE014 tiller number
32 AQBE013 tiller number
33 AQA042 root dry weight
34 AQA034 root volume
35 AQA027 root number
36 AQA019 root length
37 AQA011 tiller number
38 CQE9 carbon content
39 AQEJ079 root activity
40 AQAB017 spikelet number
41 AQDY034 panicle number
42 AQDY033 panicle number
43 AQDY032 panicle number
44 AQAM040 rhizome number
45 AQHF040 leaf senescence
46 AQHF037 chlorophyll content
47 AQHF015 chlorophyll content
48 CQB38 1000-grain weight
49 CQB37 1000-grain weight
50 CQB3 1000-grain weight
51 AQDK016 1000-seed weight
52 AQGS026 seed weight
53 AQGS007 panicle number
54 AQHP068 drought tolerance
55 AQHP050 deep root dry weight
56 AQHP038 root dry weight to tiller number ratio
57 AQHP003 root thickness
58 AQCN023 rice yellow mottle virus resistance
59 AQCI005 phosphorus sensitivity
60 AQCI001 phosphorus sensitivity
61 AQAU001 brown planthopper resistance
62 CQN11 soluble protein content
63 CQN10 soluble protein content
64 CQN9 nadh-dependent glutamate synthase content
65 CQN54 spikelet number
66 AQFW189 days to heading
67 AQFW101 panicle length
68 AQFW015 spikelet fertility
69 AQCU231 panicle length
70 CQAS14 plant height
71 AQFP026 culm thickness
72 AQFP004 culm thickness
73 AQBK012 days to heading
74 CQAA17 relative phosphorus distribution between shoot and root
75 CQAA16 relative phosphorus distribution between shoot and root
76 AQBK041 seed number
77 AQBK031 spikelet number
78 AQBK025 plant height
79 AQE024 grain yield per plant
80 AQE001 days to flower

Plant developmental stage / tissue details
Plant development stage
Not found
Plant tissue/organ
Not found
Others
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:2000012 yeast growth (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Sarkar Neelam K; Thapar Upasna; Kundnani Preeti; Panwar Priyankar; Grover Anil; Functional relevance of J-protein family of rice (Oryza sativa). Cell stress & chaperones 2013:18
PMID [23160806]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India