Rice gene details
Searching for LOC_Os02g30850 [OsGrx_C8 - glutaredoxin subgroup III, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g30850.1 136 38 108 PF00462.16 Glutaredoxin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -5
N22 Root FC
  -12
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
 

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
2 GO:0003674 molecular_function (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006979 response to oxidative stress  
2 GO:0009269 response to desiccation  
3 GO:0009651 response to salt stress  
4 GO:0009733 response to auxin stimulus  
5 GO:0009737 response to abscisic acid stimulus  
6 GO:0010555 response to mannitol stimulus  
7 GO:0042542 response to hydrogen peroxide  
8 GO:0009908 flower development (RGAP)
9 GO:0009058 biosynthetic process (RGAP)
10 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
11 GO:0008152 metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  
2 GO:0005829 cytosol  
3 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007070 indole acetic acid regimen (+)
3 EO:0007080 jasmonic acid regimen (+)
4 EO:0007105 abscisic acid regimen (+)
5 EO:0007174 cold temperature regimen (+)
6 EO:0007187 salicylic acid regimen (+)
7 EO:0007198 water environment (+)
8 EO:0007415 hydrogen peroxide (+)
9 MCE:1000008 methyl viologen (MV) (+)
10 MCE:1000023 benzyl aminopurine (BPA) (+)
11 MCE:1000044 mannitol (+)
12 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
13 MCE:1000069 dessication/dehydration stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQHR030 plant height
2 AQEY004 1000-seed weight
3 CQN55 spikelet number
4 CQN46 panicle weight
5 CQN8 glutamine synthetase content
6 CQN30 leaf senescence
7 CQAX28 plant height
8 CQAX14 plant height
9 AQDQ021 panicle length
10 DQC5 penetrated root number
11 DQC12 penetrated to total root ratio
12 AQDQ022 panicle length
13 AQDQ018 grain yield per plant
14 AQDQ017 spikelet number
15 AQDQ016 filled grain number
16 AQDQ015 panicle number
17 AQEP009 seedling vigor
18 CQQ29 plant height
19 CQQ19 root length
20 CQQ14 root dry weight to tiller number ratio
21 CQAI37 root volume
22 CQAI30 root number
23 CQAI22 root length
24 CQAI14 tiller number
25 AQEA179 days to heading
26 AQEA178 days to heading
27 AQEA177 days to heading
28 AQEA176 days to heading
29 AQEA175 days to heading
30 AQEA174 days to heading
31 AQBE051 tiller number
32 AQBE050 tiller number
33 AQBE014 tiller number
34 AQBE013 tiller number
35 AQA042 root dry weight
36 AQA034 root volume
37 AQA027 root number
38 AQA019 root length
39 AQA011 tiller number
40 CQE9 carbon content
41 AQEJ079 root activity
42 AQDY034 panicle number
43 AQDY033 panicle number
44 AQDY032 panicle number
45 AQAM040 rhizome number
46 AQHF040 leaf senescence
47 AQHF037 chlorophyll content
48 AQHF015 chlorophyll content
49 CQB38 1000-grain weight
50 CQB37 1000-grain weight
51 CQB3 1000-grain weight
52 AQDK016 1000-seed weight
53 AQGS026 seed weight
54 AQGS007 panicle number
55 AQHP068 drought tolerance
56 AQHP050 deep root dry weight
57 AQHP038 root dry weight to tiller number ratio
58 AQHP003 root thickness
59 AQCN023 rice yellow mottle virus resistance
60 AQCI005 phosphorus sensitivity
61 AQCI001 phosphorus sensitivity
62 CQN11 soluble protein content
63 CQN10 soluble protein content
64 AQFW189 days to heading
65 AQFW101 panicle length
66 AQFW015 spikelet fertility
67 AQCU231 panicle length
68 CQAS14 plant height
69 AQFP026 culm thickness
70 AQFP004 culm thickness
71 AQBK012 days to heading
72 CQAA17 relative phosphorus distribution between shoot and root
73 CQAA16 relative phosphorus distribution between shoot and root
74 AQBK041 seed number
75 AQBK031 spikelet number
76 AQBK025 plant height
77 AQE024 grain yield per plant
78 AQE001 days to flower

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (+)
2 MCP:1000518 seedling development stage (+)
3 MCP:1000521 mature plant stage (+)
4 PO:0001053 3 leaf fully expanded (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
3 PO:0009010 seed (+)
4 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000535 relative root growth (+)
2 TO:0000249 leaf senescence (+)
3 TO:0000357 growth and development trait (+)
4 TO:0000430 germination rate (+)
5 TO:0000495 chlorophyll content (+)
6 TO:0001013 lateral root number (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Sharma Raghvendra; Priya Pushp; Jain Mukesh; Modified expression of an auxin-responsive rice CC-type glutaredoxin gene affects multiple abiotic stress responses. Planta 2013:238
PMID [23918184]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India