Rice gene details
Searching for LOC_Os02g34530 [OsPDIL5-3 protein disulfide isomerase PDIL5-3, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g34530.1 426 47 151 PF00085.12 Thioredoxin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  1
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  1
IR64 Root FC
  3

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0019725 cellular homeostasis (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0005773 vacuole (RGAP)
3 GO:0005783 endoplasmic reticulum (RGAP)
4 GO:0005618 cell wall (RGAP)
5 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007069 gibberellic acid regimen (-)
2 EO:0007196 light regimen (-)
3 EO:0007204 1-naphthaleneacetic acid (-)
4 EO:0007290 kinetin regimen (-)
5 MCE:1000203 dark regimen (-)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQE11 space to culm ratio
2 CQE10 culm thickness
3 AQCW006 chlorophyll content
4 CQAX27 plant height
5 CQAX16 plant height
6 AQEE018 cracked grain percentage
7 AQEE014 head rice
8 AQDR110 grain number
9 AQDR108 1000-seed weight
10 AQDR106 grain yield per panicle
11 AQDR021 1000-seed weight
12 AQDR084 grain yield per panicle
13 AQGM007 culm length
14 CQZ3 plant height
15 CQQ30 tiller number
16 CQAI43 root thickness
17 CQAI39 root thickness
18 AQEA029 plant height
19 AQEA030 plant height
20 AQDH010 seed length to width ratio
21 AQBA007 brown planthopper resistance
22 AQBA004 brown planthopper resistance
23 AQAS009 root thickness
24 AQA040 root thickness
25 AQA036 root thickness
26 AQFR032 seedling vigor
27 AQCU124 plant height
28 AQGB055 grain length to width ratio
29 CQN55 spikelet number
30 CQN46 panicle weight
31 CQAX28 plant height
32 CQAX14 plant height
33 AQDQ021 panicle length
34 DQC5 penetrated root number
35 DQC12 penetrated to total root ratio
36 AQDQ022 panicle length
37 AQDQ018 grain yield per plant
38 AQDQ017 spikelet number
39 AQDQ016 filled grain number
40 AQDQ015 panicle number
41 AQEP009 seedling vigor
42 CQE9 carbon content
43 AQEJ079 root activity
44 AQAM040 rhizome number
45 AQHF040 leaf senescence
46 AQHF037 chlorophyll content
47 AQHF015 chlorophyll content
48 CQB38 1000-grain weight
49 CQB37 1000-grain weight
50 CQB3 1000-grain weight
51 AQDK016 1000-seed weight
52 AQGS026 seed weight
53 AQGS007 panicle number
54 AQFP026 culm thickness
55 AQFP004 culm thickness
56 AQBK012 days to heading
57 CQAA17 relative phosphorus distribution between shoot and root
58 CQAA16 relative phosphorus distribution between shoot and root
59 AQBK041 seed number
60 AQBK031 spikelet number
61 AQBK025 plant height
62 AQE024 grain yield per plant
63 AQE001 days to flower

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (-)
2 MCP:1000110 1 day pre-heading stage (-)
3 MCP:1000136 5 days pre-heading stage (-)
4 MCP:1000194 inflorescence 4-5cm stage (-)
5 MCP:1000201 14 days post-heading stage (-)
6 MCP:1000250 inflorescenece secondary branch primordium differentiation stage (-)
7 MCP:1000489 3 days post-anthesis stage (-)
8 MCP:1000518 seedling development stage (-)
9 PO:0007015 radicle emergence (-)
10 PO:0007022 imbibition (-)
11 PO:0007041 inflorescence emergence from flag leaf sheath (-)
12 PO:0007071 2.02 main shoot and axillary shoots visible at two nodes (-)
13 PO:0007106 LP.03 three leaves visible (-)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000001 embryo proper (-)
2 PO:0005052 plant callus (-)
3 PO:0006000 Poaceae hull (-)
4 PO:0009005 root (-)
5 PO:0009006 shoot system (-)
6 PO:0009010 seed (-)
7 PO:0009025 vascular leaf (-)
8 PO:0009029 stamen (-)
9 PO:0009047 stem (-)
10 PO:0009049 inflorescence (-)
11 PO:0009051 spikelet (-)
12 PO:0020031 radicle (-)
13 PO:0020032 plumule (-)
14 PO:0020103 flag leaf (-)
15 PO:0020104 leaf sheath (-)
16 PO:0025034 leaf (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nuruzzaman Mohammed; Gupta Madhur; Zhang Chengjun; Wang Lei; Xie Weibo; Xiong Lizhong; Zhang Qifa; Lian Xingming; Sequence and expression analysis of the thioredoxin protein gene family in rice. Molecular genetics and genomics 2008:280
PMID [18491141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India