Rice gene details
Searching for LOC_Os02g34600 [CAMK_CAMK_like.13 - CAMK includes calcium/calmodulin depedent protein kinases, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g34600.1 366 4 260 PF00069.17 Pkinase
2 LOC_Os02g34600.2 224 4 218 PF00069.17 Pkinase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  2
N22 Root FC
  -3
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016301 kinase activity  
2 GO:0016301 kinase activity (RGAP)
3 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006468 protein phosphorylation  
2 GO:0006970 response to osmotic stress  
3 GO:0009414 response to water deprivation  
4 GO:0009628 response to abiotic stimulus  
5 GO:0009651 response to salt stress  
6 GO:0009737 response to abscisic acid stimulus  
7 GO:0010555 response to mannitol stimulus  
8 GO:0008152 metabolic process (RGAP)
9 GO:0009987 cellular process (RGAP)
10 GO:0006950 response to stress (RGAP)
11 GO:0009628 response to abiotic stimulus (RGAP)
12 GO:0006464 protein modification process (RGAP)
13 GO:0009719 response to endogenous stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  
2 GO:0005634 nucleus (RGAP)
3 GO:0005829 cytosol (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007332 cold air temperature regimen (+)
4 EO:0007404 drought environment (+)
5 MCE:1000044 mannitol (+)
6 MCE:1000069 dessication/dehydration stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQE11 space to culm ratio
2 CQE10 culm thickness
3 AQCW006 chlorophyll content
4 CQAX27 plant height
5 CQAX16 plant height
6 AQEE018 cracked grain percentage
7 AQEE014 head rice
8 AQDR110 grain number
9 AQDR108 1000-seed weight
10 AQDR106 grain yield per panicle
11 AQDR021 1000-seed weight
12 AQDR084 grain yield per panicle
13 AQGM007 culm length
14 CQZ3 plant height
15 CQQ30 tiller number
16 CQAI43 root thickness
17 CQAI39 root thickness
18 AQEA029 plant height
19 AQEA030 plant height
20 AQDH010 seed length to width ratio
21 AQBA007 brown planthopper resistance
22 AQBA004 brown planthopper resistance
23 AQAS009 root thickness
24 AQA040 root thickness
25 AQA036 root thickness
26 AQFR032 seedling vigor
27 AQCU124 plant height
28 AQGB055 grain length to width ratio
29 CQN55 spikelet number
30 CQN46 panicle weight
31 CQAX28 plant height
32 CQAX14 plant height
33 AQDQ021 panicle length
34 DQC5 penetrated root number
35 DQC12 penetrated to total root ratio
36 AQDQ022 panicle length
37 AQDQ018 grain yield per plant
38 AQDQ017 spikelet number
39 AQDQ016 filled grain number
40 AQDQ015 panicle number
41 AQEP009 seedling vigor
42 CQE9 carbon content
43 AQEJ079 root activity
44 AQAM040 rhizome number
45 AQHF040 leaf senescence
46 AQHF037 chlorophyll content
47 AQHF015 chlorophyll content
48 CQB38 1000-grain weight
49 CQB37 1000-grain weight
50 CQB3 1000-grain weight
51 AQDK016 1000-seed weight
52 AQGS026 seed weight
53 AQGS007 panicle number
54 AQFP026 culm thickness
55 AQFP004 culm thickness
56 AQBK012 days to heading
57 CQAA17 relative phosphorus distribution between shoot and root
58 CQAA16 relative phosphorus distribution between shoot and root
59 AQBK041 seed number
60 AQBK031 spikelet number
61 AQBK025 plant height
62 AQE024 grain yield per plant
63 AQE001 days to flower

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007022 imbibition (+)
3 PO:0007065 LP.05 five leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
3 PO:0009006 shoot system (+)
4 PO:0009010 seed (+)
5 PO:0020039 leaf lamina (+)
6 PO:0020104 leaf sheath (+)
7 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000121 root growth (+)
2 MCT:1000313 kinase activity (+)
3 MCT:1000343 primary root length (+)
4 TO:0000019 seedling height (+)
5 TO:0000430 germination rate (+)

Physical interaction details
Interaction type: protein-protein
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Amino acid involved in interaction
1 BAG95943 - --- LOC_Os02g34600 - --- Protein-protein interaction analysis : Yeast two-hybrid analysis
2 BAG95943 - --- LOC_Os02g34600 - --- Protein-protein interaction analysis : Bimolecular Fluorescence Complementation (BiFC) analysis
3 BAG95943 - --- LOC_Os02g34600 - --- In vitro Phosphorylation Assay
4 LOC_Os02g34600 - LOC_Os01g64000 - - Protein-protein interaction analysis : Yeast two-hybrid analysis
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]


Xiong Haiyan; Li Jinjie; Liu Pengli; Duan Junzhi; Zhao Yan; Guo Xiao; Li Yang; Zhang Hongliang; Ali Jauhar; Li Zichao; Overexpression of OsMYB48-1, a novel MYB-related transcription factor, enhances drought and salinity tolerance in rice. PloS one 2014:9
PMID [24667379]


Tang Ning; Zhang Hua; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice. Plant physiology 2012:158
PMID [22301130]


Nam Myung Hee; Huh Sun Mi; Kim Kyung Mi; Park Woong June; Seo Jong Bok; Cho Kun; Kim Dool Yi; Kim Beom Gi; Yoon In Sun; Comparative proteomic analysis of early salt stress-responsive proteins in roots of SnRK2 transgenic rice. Proteome science 2012:10
PMID [22462395]


Chae Min-Ju; Lee Jung-Sook; Nam Myung-Hee; Cho Kun; Hong Ji-Yeon; Yi Sang-A; Suh Seok-Cheol; Yoon In-Sun; A rice dehydration-inducible SNF1-related protein kinase 2 phosphorylates an abscisic acid responsive element-binding factor and associates with ABA signaling. Plant molecular biology 2007:63
PMID [16977424]


Kobayashi Yuhko; Yamamoto Shuhei; Minami Hideyuki; Kagaya Yasuaki; Hattori Tsukaho; Differential activation of the rice sucrose nonfermenting1-related protein kinase2 family by hyperosmotic stress and abscisic acid. The Plant Cell 2004:16
PMID [15084714]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India