Rice gene details
Searching for LOC_Os02g34940 [OsPDIL1-3 protein disulfide isomerase PDIL1-3, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g34940.1 546 79 187 PF00085.12 Thioredoxin
2 LOC_Os02g34940.1 546 424 527 PF00085.12 Thioredoxin
3 LOC_Os02g34940.2 493 26 134 PF00085.12 Thioredoxin
4 LOC_Os02g34940.2 493 371 474 PF00085.12 Thioredoxin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  3
N22 Root FC
  -1
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0005515 protein binding (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0006950 response to stress (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0000003 reproduction (RGAP)
4 GO:0009791 post-embryonic development (RGAP)
5 GO:0008219 cell death (RGAP)
6 GO:0009628 response to abiotic stimulus (RGAP)
7 GO:0008152 metabolic process (RGAP)
8 GO:0008150 biological_process (RGAP)
9 GO:0009790 embryo development (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0005783 endoplasmic reticulum (RGAP)
3 GO:0009536 plastid (RGAP)
4 GO:0005773 vacuole (RGAP)
5 GO:0009579 thylakoid (RGAP)
6 GO:0005618 cell wall (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007069 gibberellic acid regimen (-)
2 EO:0007196 light regimen (-)
3 EO:0007204 1-naphthaleneacetic acid (-)
4 EO:0007290 kinetin regimen (-)
5 MCE:1000203 dark regimen (-)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGS068 grain yield
2 AQGS065 grain yield
3 AQGS034 grain yield
4 AQEI105 leaf senescence
5 AQEI104 leaf senescence
6 AQEI050 leaf senescence
7 CQE11 space to culm ratio
8 CQE10 culm thickness
9 AQCW006 chlorophyll content
10 CQAX27 plant height
11 CQAX16 plant height
12 AQEE018 cracked grain percentage
13 AQEE014 head rice
14 AQDR110 grain number
15 AQDR108 1000-seed weight
16 AQDR106 grain yield per panicle
17 AQDR021 1000-seed weight
18 AQDR084 grain yield per panicle
19 AQGM007 culm length
20 CQZ3 plant height
21 CQQ30 tiller number
22 CQAI43 root thickness
23 CQAI39 root thickness
24 AQEA029 plant height
25 AQEA030 plant height
26 AQDH010 seed length to width ratio
27 AQBA007 brown planthopper resistance
28 AQBA004 brown planthopper resistance
29 AQAS009 root thickness
30 AQA040 root thickness
31 AQA036 root thickness
32 AQFR032 seedling vigor
33 AQCU124 plant height
34 AQGB055 grain length to width ratio
35 CQN55 spikelet number
36 CQN46 panicle weight
37 CQAX28 plant height
38 CQAX14 plant height
39 AQDQ021 panicle length
40 DQC5 penetrated root number
41 DQC12 penetrated to total root ratio
42 AQDQ022 panicle length
43 AQDQ018 grain yield per plant
44 AQDQ017 spikelet number
45 AQDQ016 filled grain number
46 AQDQ015 panicle number
47 AQEP009 seedling vigor
48 CQE9 carbon content
49 AQAM040 rhizome number
50 AQFP026 culm thickness
51 AQFP004 culm thickness
52 AQBK012 days to heading
53 CQAA17 relative phosphorus distribution between shoot and root
54 CQAA16 relative phosphorus distribution between shoot and root
55 AQBK041 seed number
56 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (-)
2 MCP:1000110 1 day pre-heading stage (-)
3 MCP:1000136 5 days pre-heading stage (-)
4 MCP:1000194 inflorescence 4-5cm stage (-)
5 MCP:1000201 14 days post-heading stage (-)
6 MCP:1000250 inflorescenece secondary branch primordium differentiation stage (-)
7 MCP:1000489 3 days post-anthesis stage (-)
8 MCP:1000518 seedling development stage (-)
9 PO:0007015 radicle emergence (-)
10 PO:0007022 imbibition (-)
11 PO:0007041 inflorescence emergence from flag leaf sheath (-)
12 PO:0007071 2.02 main shoot and axillary shoots visible at two nodes (-)
13 PO:0007106 LP.03 three leaves visible (-)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000001 embryo proper (-)
2 PO:0005052 plant callus (-)
3 PO:0006000 Poaceae hull (-)
4 PO:0009005 root (-)
5 PO:0009006 shoot system (-)
6 PO:0009010 seed (-)
7 PO:0009025 vascular leaf (-)
8 PO:0009029 stamen (-)
9 PO:0009047 stem (-)
10 PO:0009049 inflorescence (-)
11 PO:0009051 spikelet (-)
12 PO:0020031 radicle (-)
13 PO:0020032 plumule (-)
14 PO:0020103 flag leaf (-)
15 PO:0020104 leaf sheath (-)
16 PO:0025034 leaf (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nuruzzaman Mohammed; Gupta Madhur; Zhang Chengjun; Wang Lei; Xie Weibo; Xiong Lizhong; Zhang Qifa; Lian Xingming; Sequence and expression analysis of the thioredoxin protein gene family in rice. Molecular genetics and genomics 2008:280
PMID [18491141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India