Rice gene details
Searching for LOC_Os02g35000 [chaperone protein dnaJ 10, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g35000.1 378 6 68 PF00226.23 DnaJ
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  3
N22InfloresenceFC
  1
N22 Root FC
  2
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  -1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0019538 protein metabolic process (RGAP)
3 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007173 warm/hot temperature regimen (+)
2 EO:0007175 temperature environment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGS068 grain yield
2 AQGS065 grain yield
3 AQGS034 grain yield
4 AQEI105 leaf senescence
5 AQEI104 leaf senescence
6 AQEI050 leaf senescence
7 CQE11 space to culm ratio
8 CQE10 culm thickness
9 AQCW006 chlorophyll content
10 CQAX27 plant height
11 CQAX16 plant height
12 AQEE018 cracked grain percentage
13 AQEE014 head rice
14 AQDR110 grain number
15 AQDR108 1000-seed weight
16 AQDR106 grain yield per panicle
17 AQDR021 1000-seed weight
18 AQDR084 grain yield per panicle
19 AQGM007 culm length
20 CQZ3 plant height
21 CQQ30 tiller number
22 CQAI43 root thickness
23 CQAI39 root thickness
24 AQEA029 plant height
25 AQEA030 plant height
26 AQDH010 seed length to width ratio
27 AQBA007 brown planthopper resistance
28 AQBA004 brown planthopper resistance
29 AQAS009 root thickness
30 AQA040 root thickness
31 AQA036 root thickness
32 AQFR032 seedling vigor
33 AQCU124 plant height
34 AQGB055 grain length to width ratio
35 CQN55 spikelet number
36 CQN46 panicle weight
37 CQAX28 plant height
38 CQAX14 plant height
39 AQDQ021 panicle length
40 DQC5 penetrated root number
41 DQC12 penetrated to total root ratio
42 AQDQ022 panicle length
43 AQDQ018 grain yield per plant
44 AQDQ017 spikelet number
45 AQDQ016 filled grain number
46 AQDQ015 panicle number
47 AQEP009 seedling vigor
48 CQE9 carbon content
49 AQAM040 rhizome number
50 AQFP026 culm thickness
51 AQFP004 culm thickness
52 AQBK012 days to heading
53 CQAA17 relative phosphorus distribution between shoot and root
54 CQAA16 relative phosphorus distribution between shoot and root
55 AQBK041 seed number
56 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
Not found
Plant tissue/organ
Not found
Others
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:2000012 yeast growth (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Sarkar Neelam K; Thapar Upasna; Kundnani Preeti; Panwar Priyankar; Grover Anil; Functional relevance of J-protein family of rice (Oryza sativa). Cell stress & chaperones 2013:18
PMID [23160806]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India