Rice gene details
Searching for LOC_Os02g36974 [14-3-3 protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g36974.1 263 9 246 PF00244.12 14/03/03
2 LOC_Os02g36974.2 263 9 246 PF00244.12 14/03/03
3 LOC_Os02g36974.3 263 9 246 PF00244.12 14/03/03
4 LOC_Os02g36974.4 263 9 246 PF00244.12 14/03/03
5 LOC_Os02g36974.5 206 9 205 PF00244.12 14/03/03
6 LOC_Os02g36974.6 194 26 177 PF00244.12 14/03/03
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  -3
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -1
IR64 Root FC
  -2

Functional details
Molecular Function
Not found
1 GO:0005515 protein binding (RGAP)
2 GO:0000166 nucleotide binding (RGAP)
Biological process
Not found
1 GO:0008150 biological_process (RGAP)
Cellular component
Not found
1 GO:0005575 cellular_component (RGAP)
2 GO:0005635 nuclear envelope (RGAP)
3 GO:0005737 cytoplasm (RGAP)
4 GO:0005886 plasma membrane (RGAP)
5 GO:0009536 plastid (RGAP)
6 GO:0005618 cell wall (RGAP)
7 GO:0005829 cytosol (RGAP)
8 GO:0005739 mitochondrion (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBJ027 primary branch
2 AQBJ023 primary branch
3 AQBJ015 primary branch
4 AQFD004 tiller number
5 CQAX31 plant height
6 AQGS068 grain yield
7 AQGS065 grain yield
8 AQGS034 grain yield
9 AQEI105 leaf senescence
10 AQEI104 leaf senescence
11 AQEI050 leaf senescence
12 CQE11 space to culm ratio
13 CQE10 culm thickness
14 CQAX27 plant height
15 CQAX16 plant height
16 AQEE018 cracked grain percentage
17 AQEE014 head rice
18 AQDR110 grain number
19 AQDR108 1000-seed weight
20 AQDR106 grain yield per panicle
21 AQDR021 1000-seed weight
22 AQDR084 grain yield per panicle
23 AQGM007 culm length
24 CQZ3 plant height
25 CQQ30 tiller number
26 CQAI43 root thickness
27 CQAI39 root thickness
28 AQEA029 plant height
29 AQEA030 plant height
30 AQDH010 seed length to width ratio
31 AQBA007 brown planthopper resistance
32 AQBA004 brown planthopper resistance
33 AQAS009 root thickness
34 AQA040 root thickness
35 AQA036 root thickness
36 AQFR032 seedling vigor
37 AQCU124 plant height
38 AQGB055 grain length to width ratio
39 CQN55 spikelet number
40 CQN46 panicle weight
41 CQAX28 plant height
42 CQAX14 plant height
43 AQDQ021 panicle length
44 DQC5 penetrated root number
45 DQC12 penetrated to total root ratio
46 CQE9 carbon content
47 AQAM040 rhizome number
48 AQFP026 culm thickness
49 AQFP004 culm thickness
50 AQBK012 days to heading
51 CQAA17 relative phosphorus distribution between shoot and root
52 CQAA16 relative phosphorus distribution between shoot and root
53 AQBK041 seed number
54 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ho Shin-Lon; Huang Li-Fen; Lu Chung-An; He Siou-Luan; Wang Chun-Chin; Yu Sheng-Ping; Chen Jychian; Yu Su-May; Sugar starvation- and GA-inducible calcium-dependent protein kinase 1 feedback regulates GA biosynthesis and activates a 14-3-3 protein to confer drought tolerance in rice seedlings. Plant molecular biology 2013:
PMID [23329372]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India