Rice gene details
Searching for LOC_Os02g38920 [glyceraldehyde-3-phosphate dehydrogenase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g38920.1 338 4 154 PF00044.16 Gp_dh_N
2 LOC_Os02g38920.1 338 159 316 PF02800.12 Gp_dh_C
3 LOC_Os02g38920.2 330 2 146 PF00044.16 Gp_dh_N
4 LOC_Os02g38920.2 330 151 308 PF02800.12 Gp_dh_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -1
N22 Root FC
  -7
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  -1
IR64 Root FC
  -3

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005488 binding (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0010044 response to aluminum ion  
2 GO:0000003 reproduction (RGAP)
3 GO:0006950 response to stress (RGAP)
4 GO:0005975 carbohydrate metabolic process (RGAP)
5 GO:0006091 generation of precursor metabolites and energy (RGAP)
6 GO:0009056 catabolic process (RGAP)
7 GO:0008152 metabolic process (RGAP)
8 GO:0009791 post-embryonic development (RGAP)
9 GO:0009628 response to abiotic stimulus (RGAP)
10 GO:0009058 biosynthetic process (RGAP)
11 GO:0009987 cellular process (RGAP)
12 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0005576 extracellular region (RGAP)
3 GO:0005829 cytosol (RGAP)
4 GO:0005739 mitochondrion (RGAP)
5 GO:0005886 plasma membrane (RGAP)
6 GO:0009536 plastid (RGAP)
7 GO:0005634 nucleus (RGAP)
8 GO:0005773 vacuole (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000222 aluminium chloride regimen (AlCl3) (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 DAPLYSINESYN-PWY lysine biosynthesis I
2 GLUCONEO-PWY gluconeogenesis
3 GLYCOLYSIS glycolysis I
4 PWY-1042 glycolysis IV (plant cytosol)
5 PWY-2941 lysine biosynthesis II
6 PWY-3801 sucrose degradation to ethanol and lactate (anaerobic)
7 PWY-5097 lysine biosynthesis VI

QTL details
S. No. QTL Id QTL Associated Trait
1 AQHE088 total biomass yield
2 AQHE024 root thickness
3 AQP013 peduncle top diameter
4 AQDJ012 internode length
5 AQFD004 tiller number
6 CQAX31 plant height
7 AQGS068 grain yield
8 AQGS065 grain yield
9 AQGS034 grain yield
10 AQEI105 leaf senescence
11 AQEI104 leaf senescence
12 AQEI050 leaf senescence
13 CQE11 space to culm ratio
14 CQE10 culm thickness
15 CQAX27 plant height
16 CQAX16 plant height
17 AQEE018 cracked grain percentage
18 AQEE014 head rice
19 AQDR110 grain number
20 AQDR108 1000-seed weight
21 AQDR106 grain yield per panicle
22 AQDR021 1000-seed weight
23 AQDR084 grain yield per panicle
24 AQGM007 culm length
25 CQZ3 plant height
26 CQQ30 tiller number
27 CQAI43 root thickness
28 CQAI39 root thickness
29 AQEA029 plant height
30 AQEA030 plant height
31 AQDH010 seed length to width ratio
32 AQBA007 brown planthopper resistance
33 AQBA004 brown planthopper resistance
34 AQAS009 root thickness
35 AQA040 root thickness
36 AQA036 root thickness
37 AQFR032 seedling vigor
38 CQN55 spikelet number
39 CQN46 panicle weight
40 CQAX28 plant height
41 CQAX14 plant height
42 AQDQ021 panicle length
43 CQE9 carbon content
44 AQAM040 rhizome number
45 AQFP026 culm thickness
46 AQFP004 culm thickness
47 AQBK012 days to heading
48 CQAA17 relative phosphorus distribution between shoot and root
49 CQAA16 relative phosphorus distribution between shoot and root
50 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Wang Zhan Qi; Xu Xiao Yan; Gong Qiao Qiao; Xie Chen; Fan Wei; Yang Jian Li; Lin Qi Shan; Zheng Shao Jian; Root proteome of rice studied by iTRAQ provides integrated insight into aluminum stress tolerance mechanisms in plants. Journal of proteomics 2014:98
PMID [24412201]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India