Rice gene details
Searching for LOC_Os02g41680 [phenylalanine ammonia-lyase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g41680.1 714 54 550 PF00221.11 PAL
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  2
N22 Root FC
  -5
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
  1
IR64 Root FC
  -6

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0009056 catabolic process (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0019748 secondary metabolic process (RGAP)
4 GO:0006950 response to stress (RGAP)
5 GO:0007275 multicellular organismal development (RGAP)
6 GO:0008152 metabolic process (RGAP)
7 GO:0009628 response to abiotic stimulus (RGAP)
8 GO:0009058 biosynthetic process (RGAP)
Cellular component
Not found
1 GO:0005737 cytoplasm (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007198 water environment (-)
2 MCE:1000321 Magnaporthe grisea isolate 12-DG2X-32-1 (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-1121 suberin biosynthesis
2 PWY-981 salicylate biosynthesis
3 PWY1F-467 phenylpropanoid biosynthesis, initial reactions

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCN025 rice yellow mottle virus resistance
2 AQCN024 rice yellow mottle virus resistance
3 AQCN004 plant height
4 CQQ25 root thickness
5 CQAI44 root thickness
6 CQAI31 root number
7 AQDH006 seed width
8 AQBQ004 iron sensitivity
9 AQBC026 panicle number
10 AQA041 root thickness
11 AQA028 root number
12 CQN7 glutamine synthetase content
13 AQHE088 total biomass yield
14 AQHE024 root thickness
15 AQP013 peduncle top diameter
16 AQDJ012 internode length
17 AQFD004 tiller number
18 CQAX31 plant height
19 AQGS068 grain yield
20 AQGS065 grain yield
21 AQGS034 grain yield
22 AQEI105 leaf senescence
23 AQEI104 leaf senescence
24 AQEI050 leaf senescence
25 CQE11 space to culm ratio
26 CQE10 culm thickness
27 CQAX27 plant height
28 CQAX16 plant height
29 AQEE018 cracked grain percentage
30 AQEE014 head rice
31 AQDR110 grain number
32 AQDR108 1000-seed weight
33 AQDR106 grain yield per panicle
34 AQDR021 1000-seed weight
35 AQDR084 grain yield per panicle
36 AQGM007 culm length
37 AQFR032 seedling vigor
38 CQN55 spikelet number
39 CQN46 panicle weight
40 CQAX28 plant height
41 CQAX14 plant height
42 AQDQ021 panicle length
43 CQE9 carbon content
44 AQAM040 rhizome number
45 AQFP026 culm thickness
46 AQFP004 culm thickness
47 AQBK012 days to heading
48 CQAA17 relative phosphorus distribution between shoot and root
49 CQAA16 relative phosphorus distribution between shoot and root
50 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0005052 plant callus (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Fu Liwen; Yu Xiangchun; An Chengcai; Overexpression of constitutively active OsCPK10 increases Arabidopsis resistance against Pseudomonas syringae pv. tomato and rice resistance against Magnaporthe grisea. Plant physiology and biochemistry : PPB / Société française de physiologie végétale 2013:73
PMID [24141028]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India