Rice gene details
Searching for LOC_Os02g41710 [cyclic nucleotide-gated ion channel, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g41710.1 687 142 407 PF00520.23 Ion_trans
2 LOC_Os02g41710.1 687 504 604 PF00027.21 cNMP_binding
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  3
N22 Root FC
 
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
 

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
2 GO:0005215 transporter activity (RGAP)
3 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009617 response to bacterium  
3 GO:0009723 response to ethylene stimulus  
4 GO:0009733 response to auxin stimulus  
5 GO:0009737 response to abscisic acid stimulus  
6 GO:0006810 transport (RGAP)
7 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007068 ethylene regimen (+)
2 EO:0007070 indole acetic acid regimen (+)
3 EO:0007105 abscisic acid regimen (+)
4 EO:0007198 water environment (+)
5 EO:0007234 Pseudomonas fuscovaginae (+)
6 EO:0007257 Xanthomonas oryzae pv. oryzae (+)
7 EO:0007290 kinetin regimen (+)
8 EO:0007332 cold air temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCN025 rice yellow mottle virus resistance
2 AQCN024 rice yellow mottle virus resistance
3 AQCN004 plant height
4 CQQ25 root thickness
5 CQAI44 root thickness
6 CQAI31 root number
7 AQDH006 seed width
8 AQBQ004 iron sensitivity
9 AQBC026 panicle number
10 AQA041 root thickness
11 AQA028 root number
12 CQN7 glutamine synthetase content
13 AQHE088 total biomass yield
14 AQHE024 root thickness
15 AQP013 peduncle top diameter
16 AQDJ012 internode length
17 AQFD004 tiller number
18 CQAX31 plant height
19 AQGS068 grain yield
20 AQGS065 grain yield
21 AQGS034 grain yield
22 AQEI105 leaf senescence
23 AQEI104 leaf senescence
24 AQEI050 leaf senescence
25 CQE11 space to culm ratio
26 CQE10 culm thickness
27 CQAX27 plant height
28 CQAX16 plant height
29 AQEE018 cracked grain percentage
30 AQEE014 head rice
31 AQDR110 grain number
32 AQDR108 1000-seed weight
33 AQDR106 grain yield per panicle
34 AQDR021 1000-seed weight
35 AQDR084 grain yield per panicle
36 AQGM007 culm length
37 AQFR032 seedling vigor
38 CQN55 spikelet number
39 CQN46 panicle weight
40 CQAX28 plant height
41 CQAX14 plant height
42 AQDQ021 panicle length
43 CQE9 carbon content
44 AQAM040 rhizome number
45 AQFP026 culm thickness
46 AQFP004 culm thickness
47 AQBK012 days to heading
48 CQAA17 relative phosphorus distribution between shoot and root
49 CQAA16 relative phosphorus distribution between shoot and root
50 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nawaz Zarqa; Kakar Kaleem Ullah; Saand Mumtaz A; Shu Qing-Yao; Cyclic nucleotide-gated ion channel gene family in rice, identification, characterization and experimental analysis of expression response to plant hormones, biotic and abiotic stresses. BMC genomics 2014:15
PMID [25280591]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India