Rice gene details
Searching for LOC_Os02g41954 [gibberellin 2-beta-dioxygenase 7, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g41954.1 360 214 314 PF03171.12 2OG-FeII_Oxy
2 LOC_Os02g41954.2 300 214 284 PF03171.12 2OG-FeII_Oxy
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  7
N22InfloresenceFC
  15
N22 Root FC
  -291
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
  5
IR64 Root FC
  -4

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0009987 cellular process (RGAP)
2 GO:0006629 lipid metabolic process (RGAP)
3 GO:0008152 metabolic process (RGAP)
Cellular component
Not found
1 GO:0005575 cellular_component (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQFE007 days to heading
2 AQFA005 amylose content
3 CQAW6 tiller number
4 AQCN025 rice yellow mottle virus resistance
5 AQCN024 rice yellow mottle virus resistance
6 AQCN004 plant height
7 CQQ25 root thickness
8 CQAI44 root thickness
9 CQAI31 root number
10 AQDH006 seed width
11 AQBQ004 iron sensitivity
12 AQBC026 panicle number
13 AQA041 root thickness
14 AQA028 root number
15 CQN7 glutamine synthetase content
16 AQHE088 total biomass yield
17 AQHE024 root thickness
18 AQP013 peduncle top diameter
19 AQDJ012 internode length
20 AQFD004 tiller number
21 CQAX31 plant height
22 AQGS068 grain yield
23 AQGS065 grain yield
24 AQGS034 grain yield
25 AQEI105 leaf senescence
26 AQEI104 leaf senescence
27 AQEI050 leaf senescence
28 CQE11 space to culm ratio
29 CQE10 culm thickness
30 CQAX27 plant height
31 CQAX16 plant height
32 AQEE018 cracked grain percentage
33 AQEE014 head rice
34 AQDR110 grain number
35 AQDR108 1000-seed weight
36 AQDR106 grain yield per panicle
37 AQDR021 1000-seed weight
38 AQDR084 grain yield per panicle
39 AQFR032 seedling vigor
40 CQN55 spikelet number
41 CQN46 panicle weight
42 CQAX28 plant height
43 CQAX14 plant height
44 AQDQ021 panicle length
45 CQE9 carbon content
46 AQAM040 rhizome number
47 AQFP026 culm thickness
48 AQFP004 culm thickness
49 AQBK012 days to heading
50 CQAA17 relative phosphorus distribution between shoot and root
51 CQAA16 relative phosphorus distribution between shoot and root
52 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Zhang Jie; Liu Xiaoqiang; Li Shuyu; Cheng Zhukuan; Li Chuanyou; The Rice Semi-Dwarf Mutant sd37, Caused by a Mutation in CYP96B4, Plays an Important Role in the Fine-Tuning of Plant Growth. PloS one 2014:9
PMID [24498428]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India