Rice gene details
Searching for LOC_Os02g43010 [vacuolar-processing enzyme precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g43010.1 497 62 334 PF01650.10 Peptidase_C13
2 LOC_Os02g43010.2 448 62 334 PF01650.10 Peptidase_C13
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  3
N22 Root FC
  4
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  2
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016787 hydrolase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009611 response to wounding  
2 GO:0009651 response to salt stress  
3 GO:0009737 response to abscisic acid stimulus  
4 GO:0019538 protein metabolic process (RGAP)
5 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005623 cell (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007373 mechanical damage (+)
4 MCE:1000171 nicotin amide (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQEE020 crushed grain percentage
2 AQEJ005 leaf length
3 AQEJ006 leaf length to width ratio
4 AQE086 spikelet number
5 AQAK017 spikelet number
6 CQH6 osmotic adjustment capacity
7 AQFT002 osmotic adjustment capacity
8 AQFW257 spikelet fertility
9 AQFR004 seedling vigor
10 AQEI117 leaf senescence
11 AQEI086 leaf senescence
12 AQEI068 leaf senescence
13 AQEI034 leaf senescence
14 AQEI003 leaf senescence
15 AQCU198 plant height
16 AQCU160 spikelet number
17 AQAP051 brown planthopper resistance
18 AQFD014 tiller bud dormancy
19 AQFD011 tiller bud dormancy
20 AQFD010 tiller bud dormancy
21 AQCC001 anther length
22 AQFE007 days to heading
23 AQFA005 amylose content
24 CQAW6 tiller number
25 AQCN025 rice yellow mottle virus resistance
26 AQCN024 rice yellow mottle virus resistance
27 AQCN004 plant height
28 CQQ25 root thickness
29 CQAI44 root thickness
30 CQAI31 root number
31 AQDH006 seed width
32 AQBQ004 iron sensitivity
33 AQBC026 panicle number
34 AQA041 root thickness
35 AQA028 root number
36 CQN7 glutamine synthetase content
37 AQHE088 total biomass yield
38 AQHE024 root thickness
39 CQAX31 plant height
40 CQE11 space to culm ratio
41 CQE10 culm thickness
42 CQAX27 plant height
43 CQAX16 plant height
44 AQEE018 cracked grain percentage
45 AQEE014 head rice
46 AQDR110 grain number
47 AQDR108 1000-seed weight
48 AQDR106 grain yield per panicle
49 AQDR021 1000-seed weight
50 AQDR084 grain yield per panicle
51 CQN55 spikelet number
52 CQN46 panicle weight
53 CQAX28 plant height
54 CQAX14 plant height
55 AQDQ021 panicle length
56 CQE9 carbon content
57 AQBK012 days to heading
58 CQAA17 relative phosphorus distribution between shoot and root
59 CQAA16 relative phosphorus distribution between shoot and root
60 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (+)
2 MCP:1000518 seedling development stage (+)
3 MCP:1000521 mature plant stage (+)
4 PO:0001040 dry seed stage (+)
5 PO:0001053 3 leaf fully expanded (+)
6 PO:0001054 4 leaf senescence stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
3 PO:0009010 seed (+)
4 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Christoff Ana Paula; Turchetto-Zolet Andreia Carina; Margis Rogerio; Uncovering legumain genes in rice. Plant science : an international journal of experimental plant biology 2014:215-216
PMID [24388520]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India