Rice gene details
Searching for LOC_Os02g43330 [homeobox associated leucine zipper, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g43330.1 262 64 119 PF00046.21 Homeobox
2 LOC_Os02g43330.1 262 120 164 PF02183.10 HALZ
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  47
N22 Root FC
  2
IR64 Flag-leaf FC
  8
IR64InfloresenceFC
  120
IR64 Root FC
  9

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0001071 nucleic acid binding transcription factor activity  
2 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0009414 response to water deprivation  
3 GO:0009651 response to salt stress  
4 GO:0009737 response to abscisic acid stimulus  
5 GO:0042542 response to hydrogen peroxide  
6 GO:0009719 response to endogenous stimulus (RGAP)
7 GO:0007165 signal transduction (RGAP)
8 GO:0006950 response to stress (RGAP)
9 GO:0009628 response to abiotic stimulus (RGAP)
10 GO:0009058 biosynthetic process (RGAP)
11 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  
2 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007173 warm/hot temperature regimen (+)
4 EO:0007174 cold temperature regimen (+)
5 EO:0007404 drought environment (+)
6 EO:0007415 hydrogen peroxide (+)
7 MCE:1000016 polyethylene glycol (PEG) treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQEE020 crushed grain percentage
2 AQEJ005 leaf length
3 AQEJ006 leaf length to width ratio
4 AQE086 spikelet number
5 AQAK017 spikelet number
6 CQH6 osmotic adjustment capacity
7 AQFT002 osmotic adjustment capacity
8 AQFW257 spikelet fertility
9 AQFR004 seedling vigor
10 AQEI117 leaf senescence
11 AQEI086 leaf senescence
12 AQEI068 leaf senescence
13 AQEI034 leaf senescence
14 AQEI003 leaf senescence
15 AQCU198 plant height
16 AQCU160 spikelet number
17 AQAP051 brown planthopper resistance
18 AQFD014 tiller bud dormancy
19 AQFD011 tiller bud dormancy
20 AQFD010 tiller bud dormancy
21 AQCC001 anther length
22 AQFE007 days to heading
23 AQFA005 amylose content
24 CQAW6 tiller number
25 AQCN025 rice yellow mottle virus resistance
26 AQCN024 rice yellow mottle virus resistance
27 AQCN004 plant height
28 CQQ25 root thickness
29 CQAI44 root thickness
30 CQAI31 root number
31 AQDH006 seed width
32 AQBQ004 iron sensitivity
33 AQBC026 panicle number
34 AQA041 root thickness
35 AQA028 root number
36 CQN7 glutamine synthetase content
37 AQHE088 total biomass yield
38 AQHE024 root thickness
39 CQAX31 plant height
40 CQE11 space to culm ratio
41 CQE10 culm thickness
42 CQAX27 plant height
43 CQAX16 plant height
44 AQEE018 cracked grain percentage
45 AQEE014 head rice
46 AQDR110 grain number
47 AQDR108 1000-seed weight
48 AQDR106 grain yield per panicle
49 AQDR021 1000-seed weight
50 AQDR084 grain yield per panicle
51 CQN55 spikelet number
52 CQN46 panicle weight
53 CQAX28 plant height
54 CQAX14 plant height
55 AQDQ021 panicle length
56 CQE9 carbon content
57 AQBK012 days to heading
58 CQAA17 relative phosphorus distribution between shoot and root
59 CQAA16 relative phosphorus distribution between shoot and root
60 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000554 inflorescence 3 cm stage (+)
3 MCP:1000555 inflorescence 8 cm stage (+)
4 MCP:1000556 inflorescence 12 cm stage (+)
5 PO:0007014 booting (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
3 PO:0009006 shoot system (+)
4 PO:0009025 vascular leaf (+)
5 PO:0009049 inflorescence (+)
6 PO:0020104 leaf sheath (+)
7 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Huang Xi; Duan Min; Liao Jiakai; Yuan Xi; Chen Hui; Feng Jiejie; Huang Ji; Zhang Hong-Sheng; OsSLI1, a homeodomain containing transcription activator, involves abscisic acid related stress response in rice (Oryza sativa L.). TheScientificWorldJournal 2014:2014
PMID [25089296]


2  Nakashima Kazuo; Jan Asad; Todaka Daisuke; Maruyama Kyonoshin; Goto Shingo; Shinozaki Kazuo; Yamaguchi-Shinozaki Kazuko; Comparative functional analysis of six drought-responsive promoters in transgenic rice. Planta 2014:239
PMID [24062085]


3  Xiang Yong; Tang Ning; Du Hao; Ye Haiyan; Xiong Lizhong; Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice. Plant Physiology 2008:148
PMID [18931143]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India