Rice gene details
Searching for LOC_Os02g43410 [transposon protein, putative, unclassified, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g43410.1 673 42 656 PF03169.7 OPT
2 LOC_Os02g43410.2 305 1 288 PF03169.7 OPT
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
 
N22 Root FC
 
IR64 Flag-leaf FC
 
IR64InfloresenceFC
 
IR64 Root FC
 

Functional details
Molecular Function
S. No. GO Id GO Description
Biological process
S. No. GO Id GO Description
1 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid  
2 GO:0010106 cellular response to iron ion starvation  
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007171 pH regimen (+)
2 EO:0007242 iron nutrient regimen (+)
3 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
4 MCE:1000143 iron deficiency treatment (+)
5 MCE:1000176 silver thiosulphate regimen (+)
6 MCE:1000177 cobalt chloride regimen (CoCl2) (+)
7 MCE:1000182 iron fertilizer regimen (+)
8 MCE:1000328 2-deoxymugineic acid (DMA) (+)
9 MCE:1000329 ethylenediaminetetraacetic acid (EDTA) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQEE020 crushed grain percentage
2 AQEJ005 leaf length
3 AQEJ006 leaf length to width ratio
4 AQE086 spikelet number
5 AQAK017 spikelet number
6 CQH6 osmotic adjustment capacity
7 AQFT002 osmotic adjustment capacity
8 AQFW257 spikelet fertility
9 AQFR004 seedling vigor
10 AQEI117 leaf senescence
11 AQEI086 leaf senescence
12 AQEI068 leaf senescence
13 AQEI034 leaf senescence
14 AQEI003 leaf senescence
15 AQCU198 plant height
16 AQCU160 spikelet number
17 AQAP051 brown planthopper resistance
18 AQFD014 tiller bud dormancy
19 AQFD011 tiller bud dormancy
20 AQFD010 tiller bud dormancy
21 AQCC001 anther length
22 AQFE007 days to heading
23 AQFA005 amylose content
24 CQAW6 tiller number
25 AQCN025 rice yellow mottle virus resistance
26 AQCN024 rice yellow mottle virus resistance
27 AQCN004 plant height
28 CQQ25 root thickness
29 CQAI44 root thickness
30 CQAI31 root number
31 AQDH006 seed width
32 AQBQ004 iron sensitivity
33 AQBC026 panicle number
34 AQA041 root thickness
35 AQA028 root number
36 CQN7 glutamine synthetase content
37 AQHE088 total biomass yield
38 AQHE024 root thickness
39 CQAX31 plant height
40 CQE11 space to culm ratio
41 CQE10 culm thickness
42 CQAX27 plant height
43 CQAX16 plant height
44 AQEE018 cracked grain percentage
45 AQEE014 head rice
46 AQDR110 grain number
47 AQDR108 1000-seed weight
48 AQDR106 grain yield per panicle
49 AQDR021 1000-seed weight
50 AQDR084 grain yield per panicle
51 CQN55 spikelet number
52 CQN46 panicle weight
53 CQAX28 plant height
54 CQAX14 plant height
55 AQDQ021 panicle length
56 CQE9 carbon content
57 AQBK012 days to heading
58 CQAA17 relative phosphorus distribution between shoot and root
59 CQAA16 relative phosphorus distribution between shoot and root
60 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007065 LP.05 five leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009006 shoot system (+)
3 PO:0025034 leaf (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Araki Ryoichi; Kousaka Kayoko; Namba Kosuke; Murata Yoshiko; Murata Jun; 2'-Deoxymugineic acid promotes growth of rice (Oryza sativa L.) by orchestrating iron and nitrate uptake processes under high pH conditions. The Plant journal : for cell and molecular biology 2015:81
PMID [25393516]


Xu Yanxia; Zhang Saina; Guo Haipeng; Wang Suikang; Xu Ligen; Li Chuanyou; Qian Qian; Chen Fan; Geisler Markus; Qi Yanhua; Jiang De An; OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.). The Plant journal : for cell and molecular biology 2014:79
PMID [24798203]


Wu Jiaojiao; Wang Chuang; Zheng Luqing; Wang Lu; Chen Yunlong; Whelan James; Shou Huixia; Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa. Journal of Experimental Botany 2011:62
PMID [21112958]


Kobayashi Takanori; Ogo Yuko; Aung May Sann; Nozoye Tomoko; Itai Reiko Nakanishi; Nakanishi Hiromi; Yamakawa Takashi; Nishizawa Naoko K; The spatial expression and regulation of transcription factors IDEF1 and IDEF2. Annals of Botany 2010:105
PMID [20197292]


Ogo Yuko; Itai Reiko Nakanishi; Nakanishi Hiromi; Kobayashi Takanori; Takahashi Michiko; Mori Satoshi; Nishizawa Naoko K; The rice bHLH protein OsIRO2 is an essential regulator of the genes involved in Fe uptake under Fe-deficient conditions. The Plant Journal 2007:51
PMID [17559517]


Koike Shintaro; Inoue Haruhiko; Mizuno Daichi; Takahashi Michiko; Nakanishi Hiromi; Mori Satoshi; Nishizawa Naoko K; OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem. The Plant Journal 2004:39
PMID [15255870]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India