Rice gene details
Searching for LOC_Os02g44870 [dehydrin, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g44870.1 291 21 286 PF00257.11 Dehydrin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  3
N22InfloresenceFC
  1
N22 Root FC
  -5
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  3
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005488 binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009414 response to water deprivation  
3 GO:0009651 response to salt stress  
4 GO:0009737 response to abscisic acid stimulus  
5 GO:0006950 response to stress (RGAP)
6 GO:0009628 response to abiotic stimulus (RGAP)
7 GO:0009719 response to endogenous stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005829 cytosol (RGAP)
2 GO:0005886 plasma membrane (RGAP)
3 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007332 cold air temperature regimen (+)
4 EO:0007404 drought environment (+)
5 MCE:1000016 polyethylene glycol (PEG) treatment (+)
6 MCE:1000044 mannitol (+)
7 MCE:1000069 dessication/dehydration stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQFP024 culm thickness
2 AQEO014 seed width
3 AQDS077 plant height
4 AQCU088 spikelet number
5 AQZ002 root length
6 CQJ3 panicle number
7 CQAW7 root number
8 CQN59 spikelet weight
9 AQEB010 1000-seed weight
10 AQEB005 1000-seed weight
11 AQEB001 1000-seed weight
12 CQE13 grain number
13 DQC6 penetrated root number
14 DQC13 penetrated to total root ratio
15 CQE12 rubisco to soluble protein content
16 CQN29 leaf senescence
17 AQEE020 crushed grain percentage
18 AQEJ005 leaf length
19 AQEJ006 leaf length to width ratio
20 AQE086 spikelet number
21 AQAK017 spikelet number
22 CQH6 osmotic adjustment capacity
23 AQFT002 osmotic adjustment capacity
24 AQFW257 spikelet fertility
25 AQFR004 seedling vigor
26 AQEI117 leaf senescence
27 AQEI086 leaf senescence
28 AQEI068 leaf senescence
29 AQEI034 leaf senescence
30 AQEI003 leaf senescence
31 AQCU198 plant height
32 AQCU160 spikelet number
33 AQAP051 brown planthopper resistance
34 AQFE007 days to heading
35 AQFA005 amylose content
36 CQAW6 tiller number
37 AQCN025 rice yellow mottle virus resistance
38 AQCN024 rice yellow mottle virus resistance
39 AQCN004 plant height
40 CQQ25 root thickness
41 CQAI44 root thickness
42 CQAI31 root number
43 AQDH006 seed width
44 AQBQ004 iron sensitivity
45 AQBC026 panicle number
46 AQA041 root thickness
47 AQA028 root number
48 CQAX31 plant height
49 CQAX27 plant height
50 CQAX16 plant height
51 AQEE018 cracked grain percentage
52 AQEE014 head rice
53 CQAX28 plant height
54 CQAX14 plant height
55 AQBK012 days to heading
56 CQAA17 relative phosphorus distribution between shoot and root
57 CQAA16 relative phosphorus distribution between shoot and root
58 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000047 inflorescence 1-2cm stage (+)
2 MCP:1000048 inflorescence 3-8cm stage (+)
3 MCP:1000458 6 days post-anthesis stage (+)
4 MCP:1000489 3 days post-anthesis stage (+)
5 MCP:1000518 seedling development stage (+)
6 MCP:1000520 young inflorescence stage (+)
7 PO:0007013 BO.03 late boot stage (+)
8 PO:0007041 inflorescence emergence from flag leaf sheath (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000096 first shoot internode (+)
2 MCP:1000395 inner epidermis of lemma (+)
3 MCP:1000396 inner epidermis of palea (+)
4 PO:0000003 whole plant (+)
5 PO:0005052 plant callus (+)
6 PO:0006340 adult leaf (+)
7 PO:0008037 seedling (+)
8 PO:0009005 root (+)
9 PO:0009006 shoot system (+)
10 PO:0009010 seed (+)
11 PO:0009049 inflorescence (+)
12 PO:0009082 floret (+)
13 PO:0020103 flag leaf (+)
14 PO:0020104 leaf sheath (+)
15 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Nakashima Kazuo; Jan Asad; Todaka Daisuke; Maruyama Kyonoshin; Goto Shingo; Shinozaki Kazuo; Yamaguchi-Shinozaki Kazuko; Comparative functional analysis of six drought-responsive promoters in transgenic rice. Planta 2014:239
PMID [24062085]


2  Fukao Takeshi; Yeung Elaine; Bailey-Serres Julia; The Submergence Tolerance Regulator SUB1A Mediates Crosstalk between Submergence and Drought Tolerance in Rice. The Plant Cell 2011:23
PMID [21239643]


3  Kim Hyunmi; Hwang Hyunsik; Hong Jung-Woo; Lee Young-Na; Ahn Il Pyung; Yoon In Sun; Yoo Sang-Dong; Lee Sukchan; Lee Sung Chul; Kim Beom-Gi; A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth. Journal of Experimental Botany 2011:
PMID [22071266]


4  Piao Hai-long; Xuan Yuan-hu; Park Su Hyun; Je Byoung Il; Park Soon Ju; Park Sung Han; Kim Chul Min; Huang Jin; Wang Guo Kui; Kim Min Jung; Kang Sang Mo; Lee In-Jung; Kwon Taek-Ryoun; Kim Yong Hwan; Yeo Un-sang; Yi Gihwan; Son DaeYoung; Han Chang-deok; OsCIPK31, a CBL-interacting protein kinase is involved in germination and seedling growth under abiotic stress conditions in rice plants. Molecules and Cells 2010:30
PMID [20652492]


5  Oh Se-Jun; Kim Youn Shic; Kwon Chang-Woo; Park Hye Kyong; Jeong Jin Seo; Kim Ju-Kon; Overexpression of the transcription factor AP37 in rice improves grain yield under drought conditions. Plant Physiology 2009:150
PMID [19429605]


6  Zou Meijuan; Guan Yucheng; Ren Haibo; Zhang Fang; Chen Fan; A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance. Plant Molecular Biology 2008:66
PMID [18236009]


7  Dai Xiaoyan; Xu Yunyuan; Ma Qibin; Xu Wenying; Wang Tai; Xue Yongbiao; Chong Kang; Overexpression of an R1R2R3 MYB gene, OsMYB3R-2, increases tolerance to freezing, drought, and salt stress in transgenic Arabidopsis. Plant Physiology 2007:143
PMID [17293435]


8  Koh Serry; Lee Sang-Choon; Kim Min-Kyung; Koh Jun Ho; Lee Sichul; An Gynheung; Choe Sunghwa; Kim Seong-Ryong; T-DNA tagged knockout mutation of rice OsGSK1, an orthologue of Arabidopsis BIN2, with enhanced tolerance to various abiotic stresses. Plant Molecular Biology 2007:65
PMID [17690841]


9  Lee Sang-Choon; Lee Mi-Yeon; Kim Soo-Jin; Jun Sung-Hoon; An Gynheung; Kim Seong-Ryong; Characterization of an abiotic stress-inducible dehydrin gene, OsDhn1, in rice (Oryza sativa L.). Molecules and Cells 2005:19
PMID [15879704]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India