Rice gene details
Searching for LOC_Os02g45570 [growth regulating factor protein, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g45570.1 212 67 103 PF08880.3 QLQ
2 LOC_Os02g45570.1 212 135 180 PF08879.2 WRC
3 LOC_Os02g45570.2 210 67 103 PF08880.3 QLQ
4 LOC_Os02g45570.2 210 133 178 PF08879.2 WRC
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  4
N22 Root FC
 
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  3
IR64 Root FC
 

Functional details
Molecular Function
Not found
Biological process
Not found
1 GO:0007275 multicellular organismal development (RGAP)
Cellular component
Not found
1 GO:0005634 nucleus (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQFE052 panicle length
2 AQED039 grain number
3 AQEI115 leaf senescence
4 AQGP054 spikelet number
5 AQEN069 blast disease resistance
6 AQEN068 blast disease resistance
7 AQDB003 chlorophyll content
8 AQFP024 culm thickness
9 AQEO014 seed width
10 AQDS077 plant height
11 AQCU088 spikelet number
12 AQZ002 root length
13 CQJ3 panicle number
14 CQN59 spikelet weight
15 AQEB010 1000-seed weight
16 AQEB005 1000-seed weight
17 AQEB001 1000-seed weight
18 CQE13 grain number
19 DQC6 penetrated root number
20 DQC13 penetrated to total root ratio
21 CQE12 rubisco to soluble protein content
22 CQN29 leaf senescence
23 AQEE020 crushed grain percentage
24 AQEJ005 leaf length
25 AQEJ006 leaf length to width ratio
26 AQE086 spikelet number
27 AQAK017 spikelet number
28 CQH6 osmotic adjustment capacity
29 AQFT002 osmotic adjustment capacity
30 AQFA005 amylose content
31 AQCN025 rice yellow mottle virus resistance
32 AQCN024 rice yellow mottle virus resistance
33 AQCN004 plant height
34 CQQ25 root thickness
35 CQAI44 root thickness
36 CQAI31 root number
37 AQDH006 seed width
38 AQBQ004 iron sensitivity
39 AQBC026 panicle number
40 AQA041 root thickness
41 AQA028 root number
42 CQAX31 plant height
43 CQAX27 plant height
44 CQAX16 plant height
45 CQAX28 plant height
46 CQAX14 plant height
47 AQBK012 days to heading
48 CQAA17 relative phosphorus distribution between shoot and root
49 CQAA16 relative phosphorus distribution between shoot and root
50 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000373 6-8 days post-anthesis stage (+)
2 MCP:1000518 seedling development stage (+)
3 MCP:1000520 young inflorescence stage (+)
4 MCP:1000521 mature plant stage (+)
5 PO:0001081 F mature embryo stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000085 lower shoot (+)
2 MCP:1000539 leaf sheath 1.5 cm above the shoot apical meristem (-)
3 MCP:1000540 leaf lamina 1.5 cm above the shoot apical meristem (-)
4 PO:0000001 embryo proper (+)
5 PO:0000003 whole plant (+)
6 PO:0005004 shoot node (+)
7 PO:0005005 shoot internode (-)
8 PO:0009051 spikelet (-)
9 PO:0020039 leaf lamina (-)
10 PO:0020104 leaf sheath (-)
11 PO:0020105 ligule (-)
12 PO:0020106 auricle (-)
13 PO:0020122 inflorescence axis (+)
14 PO:0020148 shoot apical meristem (+)
15 PO:0025034 leaf (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 TO:0000346 tiller number (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Kuijt Suzanne J H; Greco Raffaella; Agalou Adamantia; Shao Jingxia; 't Hoen Corine C J; Overnäs Elin; Osnato Michela; Curiale Serena; Meynard Donaldo; van Gulik Robert; de Faria Maraschin Simone; Atallah Mirna; de Kam Rolf J; Lamers Gerda E M; Guiderdoni Emmanuel; Rossini Laura; Meijer Annemarie H; Ouwerkerk Pieter B F; Interaction between the GRF and KNOX families of transcription factors. Plant physiology 2014:
PMID [24532604]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India