Rice gene details
Searching for LOC_Os02g47470 [cytochrome P450, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g47470.1 472 40 432 PF00067.14 p450
2 LOC_Os02g47470.2 442 375 402 PF00067.14 p450
3 LOC_Os02g47470.3 352 285 312 PF00067.14 p450
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  8
N22InfloresenceFC
  -10
N22 Root FC
  7
IR64 Flag-leaf FC
  16
IR64InfloresenceFC
  14
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0010295 (+)-abscisic acid 8'-hydroxylase activity  
2 GO:0019825 oxygen binding (RGAP)
3 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009414 response to water deprivation  
3 GO:0009723 response to ethylene stimulus  
4 GO:0009737 response to abscisic acid stimulus  
5 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid  
6 GO:0030912 response to deep water  
7 GO:0006950 response to stress (RGAP)
8 GO:0009607 response to biotic stimulus (RGAP)
9 GO:0009987 cellular process (RGAP)
10 GO:0006629 lipid metabolic process (RGAP)
11 GO:0008152 metabolic process (RGAP)
12 GO:0000003 reproduction (RGAP)
13 GO:0009791 post-embryonic development (RGAP)
14 GO:0009628 response to abiotic stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005783 endoplasmic reticulum  
2 GO:0005623 cell (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007068 ethylene regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007332 cold air temperature regimen (+)
4 EO:0007383 watering regimen (+)
5 EO:0007404 drought environment (+)
6 MCE:1000010 submergence stress (+)
7 MCE:1000016 polyethylene glycol (PEG) treatment (+)
8 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
9 MCE:1000241 D-glucose (+)
10 MCE:1000242 D-allose (+)
11 MCE:1000309 1-methylcyclopropene (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-2582 brassinosteroid biosynthesis II

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCV002 grain length
2 AQCR002 grain yield
3 CQH9 root pulling force
4 AQR053 root thickness
5 AQR052 root thickness
6 AQGB018 grain length
7 AQGB019 grain length
8 AQGB017 grain length
9 AQO068 root length
10 AQO048 root thickness
11 AQC013 penetrated to total root ratio
12 AQDO006 invitro regeneration ability
13 AQDO002 invitro regeneration ability
14 AQFE052 panicle length
15 AQED039 grain number
16 AQEI115 leaf senescence
17 AQEN069 blast disease resistance
18 AQEN068 blast disease resistance
19 AQEO014 seed width
20 AQDS077 plant height
21 AQCU088 spikelet number
22 AQZ002 root length
23 CQN59 spikelet weight
24 AQEB010 1000-seed weight
25 AQEB005 1000-seed weight
26 AQEB001 1000-seed weight
27 CQE13 grain number
28 DQC6 penetrated root number
29 DQC13 penetrated to total root ratio
30 CQE12 rubisco to soluble protein content
31 AQEE020 crushed grain percentage
32 AQEJ005 leaf length
33 AQEJ006 leaf length to width ratio
34 AQE086 spikelet number
35 AQAK017 spikelet number
36 AQFA005 amylose content
37 AQCN025 rice yellow mottle virus resistance
38 AQCN024 rice yellow mottle virus resistance
39 AQCN004 plant height
40 CQAX31 plant height
41 CQAX27 plant height
42 CQAX28 plant height
43 AQBK012 days to heading
44 CQAA17 relative phosphorus distribution between shoot and root
45 CQAA16 relative phosphorus distribution between shoot and root
46 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000204 5 days post-anthesis stage (+)
2 MCP:1000330 pre-anthesis stage (+)
3 MCP:1000376 15 days post-anthesis stage (+)
4 MCP:1000454 10 days post-anthesis stage (+)
5 MCP:1000473 20 days post-anthesis stage (+)
6 MCP:1000477 25 days post-anthesis stage (+)
7 MCP:1000505 30 days post-anthesis stage (+)
8 MCP:1000518 seedling development stage (+)
9 PO:0001012 G early unicellular microspore stage (+)
10 PO:0007022 imbibition (+)
11 PO:0007065 LP.05 five leaves visible (+)
12 PO:0007616 4 anthesis (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
3 PO:0009006 shoot system (+)
4 PO:0009010 seed (+)
5 PO:0009066 anther (+)
6 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Du Hao; Chang Yu; Huang Fei; Xiong Lizhong; GID1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice. Journal of integrative plant biology 2014:
PMID [25418692]


Liu Yang; Fang Jun; Xu Fan; Chu Jinfang; Yan Cunyu; Schläppi Michael R; Wang Youping; Chu Chengcai; Expression patterns of ABA and GA metabolism genes and hormone levels during rice seed development and imbibition: a comparison of dormant and non-dormant rice cultivars. Journal of genetics and genomics = Yi chuan xue bao 2014:41
PMID [24976122]


Fukumoto Takeshi; Kano Akihito; Ohtani Kouhei; Inoue Megumi; Yoshihara Akihide; Izumori Ken; Tajima Shigeyuki; Shigematsu Yoshio; Tanaka Keiji; Ohkouchi Takeo; Ishida Yutaka; Nishizawa Yoko; Tada Yasuomi; Ichimura Kazuya; Gomi Kenji; Yoo Sang-Dong; Sheen Jen; Akimitsu Kazuya; Phosphorylation of D-allose by hexokinase involved in regulation of OsABF1 expression for growth inhibition in Oryza sativa L. Planta 2013:
PMID [23397192]


Du Hao; Wu Nai; Fu Jing; Wang Shiping; Li Xianghua; Xiao Jinghua; Xiong Lizhong; A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice. Journal of Experimental Botany 2012:
PMID [23112280]


Ye Nenghui; Zhu Guohui; Liu Yinggao; Li Yingxuan; Zhang Jianhua; ABA controls H₂O₂ accumulation through the induction of OsCATB in rice leaves under water stress. Plant & cell physiology 2011:52
PMID [21398647]


Su Chin-Fen; Wang Yi-Chieh; Hsieh Tsai-Hung; Lu Chung-An; Tseng Tung-Hai; Yu Su-May; A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiology 2010:153
PMID [20130099]


Oliver Sandra N; Dennis Elizabeth S; Dolferus Rudy; ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice. Plant & cell physiology 2007:48
PMID [17693452]


Saika Hiroaki; Okamoto Masanori; Miyoshi Kentaro; Kushiro Tetsuo; Shinoda Shoko; Jikumaru Yusuke; Fujimoto Masaru; Arikawa Taku; Takahashi Hirokazu; Ando Miho; Arimura Shin-Ichi; Miyao Akio; Hirochika Hirohiko; Kamiya Yuji; Tsutsumi Nobuhiro; Nambara Eiji; Nakazono Mikio; Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice. Plant & cell physiology 2007:48
PMID [17205969]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India