Rice gene details
Searching for LOC_Os02g47510 [9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g47510.1 639 131 630 PF03055.7 RPE65
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -2
N22 Root FC
  -1
IR64 Flag-leaf FC
  -2
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009414 response to water deprivation  
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007198 water environment (+)
2 EO:0007261 copper nutrient regimen (+)
3 EO:0007383 watering regimen (+)
4 MCE:1000016 polyethylene glycol (PEG) treatment (+)
5 MCE:1000044 mannitol (+)
6 MCE:1000241 D-glucose (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCV002 grain length
2 AQCR002 grain yield
3 CQH9 root pulling force
4 AQR053 root thickness
5 AQR052 root thickness
6 AQGB018 grain length
7 AQGB019 grain length
8 AQGB017 grain length
9 AQO068 root length
10 AQO048 root thickness
11 AQC013 penetrated to total root ratio
12 AQDO006 invitro regeneration ability
13 AQDO002 invitro regeneration ability
14 AQFE052 panicle length
15 AQED039 grain number
16 AQEI115 leaf senescence
17 AQEN069 blast disease resistance
18 AQEN068 blast disease resistance
19 AQEO014 seed width
20 AQDS077 plant height
21 AQCU088 spikelet number
22 AQZ002 root length
23 CQN59 spikelet weight
24 AQEB010 1000-seed weight
25 AQEB005 1000-seed weight
26 AQEB001 1000-seed weight
27 CQE13 grain number
28 DQC6 penetrated root number
29 DQC13 penetrated to total root ratio
30 CQE12 rubisco to soluble protein content
31 AQEE020 crushed grain percentage
32 AQEJ005 leaf length
33 AQEJ006 leaf length to width ratio
34 AQE086 spikelet number
35 AQAK017 spikelet number
36 AQFA005 amylose content
37 AQCN025 rice yellow mottle virus resistance
38 AQCN024 rice yellow mottle virus resistance
39 AQCN004 plant height
40 CQAX31 plant height
41 CQAX27 plant height
42 CQAX28 plant height
43 AQBK012 days to heading
44 CQAA17 relative phosphorus distribution between shoot and root
45 CQAA16 relative phosphorus distribution between shoot and root
46 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000204 5 days post-anthesis stage (+)
2 MCP:1000330 pre-anthesis stage (+)
3 MCP:1000376 15 days post-anthesis stage (+)
4 MCP:1000454 10 days post-anthesis stage (+)
5 MCP:1000473 20 days post-anthesis stage (+)
6 MCP:1000477 25 days post-anthesis stage (+)
7 MCP:1000505 30 days post-anthesis stage (+)
8 MCP:1000518 seedling development stage (+)
9 PO:0007022 imbibition (+)
10 PO:0007616 4 anthesis (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0009010 seed (+)
3 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Liu Yang; Fang Jun; Xu Fan; Chu Jinfang; Yan Cunyu; Schläppi Michael R; Wang Youping; Chu Chengcai; Expression patterns of ABA and GA metabolism genes and hormone levels during rice seed development and imbibition: a comparison of dormant and non-dormant rice cultivars. Journal of genetics and genomics = Yi chuan xue bao 2014:41
PMID [24976122]


2  Ye Nenghui; Li Haoxuan; Zhu Guohui; Liu Yinggao; Liu Rui; Xu Weifeng; Jing Yu; Peng Xinxiang; Zhang Jianhua; Copper Suppresses Abscisic Acid Catabolism and Catalase Activity and Inhibits Seed Germination of Rice. Plant & cell physiology 2014:
PMID [25273891]


3  Du Hao; Wu Nai; Fu Jing; Wang Shiping; Li Xianghua; Xiao Jinghua; Xiong Lizhong; A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice. Journal of Experimental Botany 2012:
PMID [23112280]


4  Ye Nenghui; Zhu Guohui; Liu Yinggao; Li Yingxuan; Zhang Jianhua; ABA controls H₂O₂ accumulation through the induction of OsCATB in rice leaves under water stress. Plant & cell physiology 2011:52
PMID [21398647]


5  Zhu Guohui; Ye Nenghui; Zhang Jianhua; Glucose-induced delay of seed germination in rice is mediated by the suppression of ABA catabolism rather than an enhancement of ABA biosynthesis. Plant & cell physiology 2009:50
PMID [19208695]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India