Rice gene details
Searching for LOC_Os02g47850 [class I glutamine amidotransferase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g47850.1 474 75 222 PF00988.14 CPSase_sm_chain
2 LOC_Os02g47850.1 474 263 467 PF00117.20 GATase
3 LOC_Os02g47850.2 447 75 222 PF00988.14 CPSase_sm_chain
4 LOC_Os02g47850.2 447 263 440 PF00117.20 GATase
5 LOC_Os02g47850.3 411 75 222 PF00988.14 CPSase_sm_chain
6 LOC_Os02g47850.3 411 263 377 PF00117.20 GATase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -2
N22 Root FC
  1
IR64 Flag-leaf FC
  -2
IR64InfloresenceFC
  -1
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0009991 response to extracellular stimulus (RGAP)
2 GO:0007154 cell communication (RGAP)
3 GO:0006950 response to stress (RGAP)
4 GO:0008152 metabolic process (RGAP)
Cellular component
Not found
1 GO:0005737 cytoplasm (RGAP)
2 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007173 warm/hot temperature regimen (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 ARGSYN-PWY arginine biosynthesis I
2 ARGSYNBSUB-PWY arginine biosynthesis II (acetyl cycle)
3 DENOVOPURINE2-PWY purine nucleotides de novo biosynthesis I
4 PWY-5043 salvage pathways of purine nucleosides II (plant)
5 PWY-841 purine nucleotides de novo biosynthesis II
6 PWY0-162 de novo biosynthesis of pyrimidine ribonucleotides

QTL details
S. No. QTL Id QTL Associated Trait
1 AQHF027 leaf senescence
2 AQCV002 grain length
3 AQCR002 grain yield
4 CQH9 root pulling force
5 AQR053 root thickness
6 AQR052 root thickness
7 AQGB018 grain length
8 AQGB019 grain length
9 AQGB017 grain length
10 AQO068 root length
11 AQO048 root thickness
12 AQC013 penetrated to total root ratio
13 AQDO006 invitro regeneration ability
14 AQDO002 invitro regeneration ability
15 AQFE052 panicle length
16 AQED039 grain number
17 AQEI115 leaf senescence
18 AQEN069 blast disease resistance
19 AQEN068 blast disease resistance
20 AQEO014 seed width
21 AQDS077 plant height
22 AQCU088 spikelet number
23 AQZ002 root length
24 CQN59 spikelet weight
25 AQEB010 1000-seed weight
26 AQEB005 1000-seed weight
27 AQEB001 1000-seed weight
28 CQE13 grain number
29 DQC6 penetrated root number
30 DQC13 penetrated to total root ratio
31 CQE12 rubisco to soluble protein content
32 AQEE020 crushed grain percentage
33 AQEJ005 leaf length
34 AQEJ006 leaf length to width ratio
35 AQE086 spikelet number
36 AQAK017 spikelet number
37 AQFA005 amylose content
38 AQCN025 rice yellow mottle virus resistance
39 AQCN024 rice yellow mottle virus resistance
40 AQCN004 plant height
41 CQAX31 plant height
42 CQAX27 plant height
43 CQAX28 plant height
44 AQBK012 days to heading
45 CQAA17 relative phosphorus distribution between shoot and root
46 CQAA16 relative phosphorus distribution between shoot and root
47 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009025 vascular leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
S. No. Primary rice gene loci

Interacting rice gene loci

Experiment type

Id

Domain name/N or C term

Amino acid involved in interaction

Id

Domain name/N or C term

Bases
involved in interaction
Reference point cis-elements [PLACE Id]
1 LOC_Os05g48010 - --- LOC_Os02g47850 - 460 - - Protein-DNA interaction analysis : Electrophoretic Mobility Shift Assay (EMSA)
      TSS - Transcriptional start site
TrSS - Translational start site
TSS-Pu - Putative TSS by cDNA alignment
TSS-P - Predicted TSS
Related publications [Sorted by year]

El-Kereamy Ashraf; Bi Yong-Mei; Ranathunge Kosala; Beatty Perrin H; Good Allen G; Rothstein Steven J; The Rice R2R3-MYB Transcription Factor OsMYB55 Is Involved in the Tolerance to High Temperature and Modulates Amino Acid Metabolism. PloS one 2012:7
PMID [23251677]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India