Rice gene details
Searching for LOC_Os02g50240 [glutamine synthetase, catalytic domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g50240.1 357 17 97 PF03951.11 Gln-synt_N
2 LOC_Os02g50240.1 357 103 355 PF00120.16 Gln-synt_C
3 LOC_Os02g50240.2 267 13 265 PF00120.16 Gln-synt_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
N22 Root FC
IR64 Flag-leaf FC
IR64 Root FC

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity  
2 GO:0003824 catalytic activity (RGAP)
3 GO:0005515 protein binding (RGAP)
4 GO:0005488 binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009414 response to water deprivation  
2 GO:0009628 response to abiotic stimulus  
3 GO:0060359 response to ammonium ion  
4 GO:0008152 metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005575 cellular_component (RGAP)
2 GO:0005618 cell wall (RGAP)
3 GO:0005829 cytosol (RGAP)
4 GO:0005886 plasma membrane (RGAP)
5 GO:0005840 ribosome (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007097 ammonium sulfate regimen (+)
2 MCE:1000069 dessication/dehydration stress (+)
3 MCE:1000294 ammonium chloride (NH4) (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 GLNSYN-PWY glutamine biosynthesis I
2 PWY-3282 ammonia assimilation cycle II
3 PWY-381 nitrate reduction II (assimilatory)

QTL details
S. No. QTL Id QTL Associated Trait
1 AQJ005 panicle number
2 AQO089 root number
3 AQO070 root length
4 CQE14 days to heading
5 AQCK006 days to heading
6 AQCW005 chlorophyll content
7 AQCV011 grain width
8 AQCV001 grain length
9 AQFQ002 primary branch
10 AQFQ001 flower number
11 AQDQ014 panicle length
12 AQDQ012 plant height
13 AQDQ013 panicle length
14 AQDQ010 plant height
15 AQDQ011 plant height
16 CQAW5 root penetration index
17 AQFE114 tiller angle
18 AQED049 grain yield per plant
19 AQED031 grain number
20 AQFU021 protein content
21 AQEI106 leaf senescence
22 AQEI004 leaf senescence
23 CQAF8 gelatinization temperature
24 AQHF027 leaf senescence
25 AQCR002 grain yield
26 AQFE052 panicle length
27 AQED039 grain number
28 AQEN069 blast disease resistance
29 AQEN068 blast disease resistance
30 AQEO014 seed width
31 AQDS077 plant height
32 CQN59 spikelet weight
33 AQEB010 1000-seed weight
34 AQEB005 1000-seed weight
35 AQEB001 1000-seed weight
36 CQE13 grain number
37 AQEE020 crushed grain percentage
38 AQEJ005 leaf length
39 AQEJ006 leaf length to width ratio
40 AQE086 spikelet number
41 AQAK017 spikelet number
42 AQFA005 amylose content
43 AQCN025 rice yellow mottle virus resistance
44 AQCN024 rice yellow mottle virus resistance
45 AQCN004 plant height
46 CQAX31 plant height
47 CQAX27 plant height
48 CQAX28 plant height
49 AQBK012 days to heading
50 CQAA17 relative phosphorus distribution between shoot and root
51 CQAA16 relative phosphorus distribution between shoot and root
52 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009006 shoot system (+)
3 PO:0009047 stem (+)
4 PO:0025034 leaf (+)
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000049 glutamine synthetase (GS) activity (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ranathunge Kosala; El-Kereamy Ashraf; Gidda Satinder; Bi Yong-Mei; Rothstein Steven J; AMT1;1 transgenic rice plants with enhanced NH4 + permeability show superior growth and higher yield under optimal and suboptimal NH4 + conditions. Journal of experimental botany 2014:65
PMID [24420570]

Funayama Kazuhiro; Kojima Soichi; Tabuchi-Kobayashi Mayumi; Sawa Yuki; Nakayama Yosuke; Hayakawa Toshihiko; Yamaya Tomoyuki; Cytosolic glutamine synthetase1;2 is responsible for the primary assimilation of ammonium in rice roots. Plant & cell physiology 2013:
PMID [23509111]

Singh Kamal Krishna; Ghosh Shilpi; Regulation of glutamine synthetase isoforms in two differentially drought-tolerant rice (Oryza sativa L.) cultivars under water deficit conditions. Plant Cell Reports 2012:
PMID [23070303]

Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India