Rice gene details
Searching for LOC_Os02g50960 [auxin efflux carrier component, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g50960.1 596 9 590 PF03547.10 Mem_trans
2 LOC_Os02g50960.2 575 9 574 PF03547.10 Mem_trans
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  3
N22InfloresenceFC
  -3
N22 Root FC
  -2
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  2
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0005215 transporter activity (RGAP)
Biological process
Not found
1 GO:0008150 biological_process (RGAP)
2 GO:0006810 transport (RGAP)
3 GO:0007165 signal transduction (RGAP)
4 GO:0009719 response to endogenous stimulus (RGAP)
5 GO:0009987 cellular process (RGAP)
6 GO:0007275 multicellular organismal development (RGAP)
7 GO:0000003 reproduction (RGAP)
8 GO:0009791 post-embryonic development (RGAP)
9 GO:0009790 embryo development (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0005575 cellular_component (RGAP)
3 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000347 alginate oligosaccharide (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAB18 plant height
2 CQAB17 plant height
3 CQAB16 plant height
4 CQAB15 plant height
5 AQBC008 plant height
6 AQBC007 plant height
7 AQBC006 plant height
8 AQBB071 plant height
9 AQBB070 plant height
10 AQBB069 plant height
11 AQBB068 plant height
12 AQBB066 plant height
13 AQBB067 plant height
14 AQBB065 plant height
15 AQBB063 plant height
16 AQBB064 plant height
17 AQBB062 plant height
18 AQBB061 plant height
19 AQBB060 plant height
20 AQBB059 plant height
21 AQBB057 plant height
22 AQBB058 plant height
23 AQBB056 plant height
24 AQBB055 plant height
25 AQBB054 plant height
26 AQBB052 plant height
27 AQBB053 plant height
28 AQBB051 plant height
29 AQBB050 plant height
30 AQBB049 plant height
31 AQBB048 plant height
32 AQBB047 plant height
33 AQBB046 plant height
34 AQBB045 plant height
35 AQBB044 plant height
36 AQBB043 plant height
37 AQBB042 plant height
38 AQBB041 plant height
39 AQBB040 plant height
40 AQBB039 plant height
41 AQJ005 panicle number
42 AQO089 root number
43 AQO070 root length
44 CQE14 days to heading
45 AQCK006 days to heading
46 AQCW005 chlorophyll content
47 AQCV011 grain width
48 AQCV001 grain length
49 AQFQ002 primary branch
50 AQFQ001 flower number
51 AQDQ014 panicle length
52 AQDQ012 plant height
53 AQDQ013 panicle length
54 AQDQ010 plant height
55 AQDQ011 plant height
56 AQFE114 tiller angle
57 AQED049 grain yield per plant
58 AQED031 grain number
59 AQFU021 protein content
60 AQEI106 leaf senescence
61 AQEI004 leaf senescence
62 AQHF027 leaf senescence
63 AQCR002 grain yield
64 AQFE052 panicle length
65 AQED039 grain number
66 AQEO014 seed width
67 AQDS077 plant height
68 CQN59 spikelet weight
69 AQEB010 1000-seed weight
70 AQEB005 1000-seed weight
71 AQEB001 1000-seed weight
72 CQE13 grain number
73 AQEE020 crushed grain percentage
74 AQEJ005 leaf length
75 AQEJ006 leaf length to width ratio
76 AQE086 spikelet number
77 AQAK017 spikelet number
78 AQFA005 amylose content
79 CQAX31 plant height
80 CQAX27 plant height
81 CQAX28 plant height
82 AQBK012 days to heading
83 CQAA17 relative phosphorus distribution between shoot and root
84 CQAA16 relative phosphorus distribution between shoot and root
85 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Zhang Yunhong; Yin Heng; Zhao Xiaoming; Wang Wenxia; Du Yuguang; He Ailing; Sun Kegang; The promoting effects of alginate oligosaccharides on root development in Oryza sativa L. mediated by auxin signaling. Carbohydrate polymers 2014:113
PMID [25256506]


Du Hao; Wu Nai; Fu Jing; Wang Shiping; Li Xianghua; Xiao Jinghua; Xiong Lizhong; A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice. Journal of Experimental Botany 2012:
PMID [23112280]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India