Rice gene details
Searching for LOC_Os02g51110 [aquaporin protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g51110.1 299 41 254 PF00230.12 MIP
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  6
N22 Root FC
  3
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  2
IR64 Root FC
  3

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0010038 response to metal ion  
2 GO:0046686 response to cadmium ion  
3 GO:0046688 response to copper ion  
4 GO:0006810 transport (RGAP)
5 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007223 cadmium chloride (+)
2 EO:0007527 cupric sulfate (+)
3 MCE:1000301 sodium silicate (Na2SiO3) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQAB18 plant height
2 CQAB17 plant height
3 CQAB16 plant height
4 CQAB15 plant height
5 AQBC008 plant height
6 AQBC007 plant height
7 AQBC006 plant height
8 AQBB071 plant height
9 AQBB070 plant height
10 AQBB069 plant height
11 AQBB068 plant height
12 AQBB066 plant height
13 AQBB067 plant height
14 AQBB065 plant height
15 AQBB063 plant height
16 AQBB064 plant height
17 AQBB062 plant height
18 AQBB061 plant height
19 AQBB060 plant height
20 AQBB059 plant height
21 AQBB057 plant height
22 AQBB058 plant height
23 AQBB056 plant height
24 AQBB055 plant height
25 AQBB054 plant height
26 AQBB052 plant height
27 AQBB053 plant height
28 AQBB051 plant height
29 AQBB050 plant height
30 AQBB049 plant height
31 AQBB048 plant height
32 AQBB047 plant height
33 AQBB046 plant height
34 AQBB045 plant height
35 AQBB044 plant height
36 AQBB043 plant height
37 AQBB042 plant height
38 AQBB041 plant height
39 AQBB040 plant height
40 AQBB039 plant height
41 AQJ005 panicle number
42 AQO089 root number
43 AQO070 root length
44 CQE14 days to heading
45 AQCK006 days to heading
46 AQCW005 chlorophyll content
47 AQCV011 grain width
48 AQCV001 grain length
49 AQFQ002 primary branch
50 AQFQ001 flower number
51 AQDQ014 panicle length
52 AQDQ012 plant height
53 AQDQ013 panicle length
54 AQDQ010 plant height
55 AQDQ011 plant height
56 AQFE114 tiller angle
57 AQED049 grain yield per plant
58 AQED031 grain number
59 AQFU021 protein content
60 AQEI106 leaf senescence
61 AQEI004 leaf senescence
62 AQHF027 leaf senescence
63 AQCR002 grain yield
64 AQFE052 panicle length
65 AQED039 grain number
66 AQEO014 seed width
67 AQDS077 plant height
68 CQN59 spikelet weight
69 AQEB010 1000-seed weight
70 AQEB005 1000-seed weight
71 AQEB001 1000-seed weight
72 CQE13 grain number
73 AQEE020 crushed grain percentage
74 AQEJ005 leaf length
75 AQEJ006 leaf length to width ratio
76 AQE086 spikelet number
77 AQAK017 spikelet number
78 AQFA005 amylose content
79 CQAX31 plant height
80 CQAX27 plant height
81 CQAX28 plant height
82 AQBK012 days to heading
83 CQAA17 relative phosphorus distribution between shoot and root
84 CQAA16 relative phosphorus distribution between shoot and root
85 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000258 root segment, 1 cm from tip (+)
2 MCP:1000259 root segment, 1-2cm from root tip (+)
3 MCP:1000260 root segment, 2-3cm from tip (+)
4 MCP:1000462 root segment, 3-4cm from tip (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (-)
7 PO:0020039 leaf lamina (-)
8 PO:0020104 leaf sheath (-)
9 PO:0020127 primary root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Kim Yoon-Ha; Khan Abdul Latif; Kim Duk-Hwan; Lee Seung-Yeol; Kim Kyung-Min; Waqas Muhammad; Jung Hee-Young; Shin Jae-Ho; Kim Jong-Guk; Lee In-Jung; Silicon mitigates heavy metal stress by regulating P-type heavy metal ATPases, Oryza sativa low silicon genes, and endogenous phytohormones. BMC plant biology 2014:14
PMID [24405887]


Yamaji Naoki; Mitatni Namiki; Ma Jian Feng; A transporter regulating silicon distribution in rice shoots. The Plant Cell 2008:20
PMID [18515498]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India