Rice gene details
Searching for LOC_Os02g51860 [dehydration response related protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os02g51860.1 661 132 654 PF03141.8 DUF248
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -2
N22 Root FC
  -6
IR64 Flag-leaf FC
  5
IR64InfloresenceFC
  2
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0016740 transferase activity (RGAP)
Biological process
Not found
1 GO:0009719 response to endogenous stimulus (RGAP)
2 GO:0009058 biosynthetic process (RGAP)
3 GO:0005975 carbohydrate metabolic process (RGAP)
4 GO:0009987 cellular process (RGAP)
5 GO:0008152 metabolic process (RGAP)
6 GO:0007275 multicellular organismal development (RGAP)
Cellular component
Not found
1 GO:0005794 Golgi apparatus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007105 abscisic acid regimen (-)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQE012 filled grain number
2 AQQ006 grain yield
3 AQQ002 grain yield
4 AQEX029 total biomass yield
5 AQEX022 root dry weight
6 AQEX016 biomass yield
7 AQCB015 seed set percent
8 AQFE070 100-grain weight
9 AQFE069 100-grain weight
10 AQFJ066 grain yield per plant
11 CQAB18 plant height
12 CQAB17 plant height
13 CQAB16 plant height
14 CQAB15 plant height
15 AQBC008 plant height
16 AQBC007 plant height
17 AQBC006 plant height
18 AQBB071 plant height
19 AQBB070 plant height
20 AQBB069 plant height
21 AQBB068 plant height
22 AQBB066 plant height
23 AQBB067 plant height
24 AQBB065 plant height
25 AQBB063 plant height
26 AQBB064 plant height
27 AQBB062 plant height
28 AQBB061 plant height
29 AQBB060 plant height
30 AQBB059 plant height
31 AQBB057 plant height
32 AQBB058 plant height
33 AQBB056 plant height
34 AQBB055 plant height
35 AQBB054 plant height
36 AQBB052 plant height
37 AQBB053 plant height
38 AQBB051 plant height
39 AQBB050 plant height
40 AQBB049 plant height
41 AQBB048 plant height
42 AQBB047 plant height
43 AQBB046 plant height
44 AQBB045 plant height
45 AQBB044 plant height
46 AQBB043 plant height
47 AQBB042 plant height
48 AQBB041 plant height
49 AQBB040 plant height
50 AQBB039 plant height
51 AQJ005 panicle number
52 AQO089 root number
53 AQO070 root length
54 CQE14 days to heading
55 AQCK006 days to heading
56 AQCW005 chlorophyll content
57 AQCV011 grain width
58 AQCV001 grain length
59 AQFQ002 primary branch
60 AQFQ001 flower number
61 AQDQ014 panicle length
62 AQDQ012 plant height
63 AQDQ013 panicle length
64 AQDQ010 plant height
65 AQDQ011 plant height
66 AQFE114 tiller angle
67 AQED049 grain yield per plant
68 AQED031 grain number
69 AQFU021 protein content
70 AQCR002 grain yield
71 AQFE052 panicle length
72 AQED039 grain number
73 AQEO014 seed width
74 AQDS077 plant height
75 CQN59 spikelet weight
76 AQEB010 1000-seed weight
77 AQEB005 1000-seed weight
78 AQEB001 1000-seed weight
79 CQE13 grain number
80 AQEE020 crushed grain percentage
81 AQFA005 amylose content
82 CQAX31 plant height
83 CQAX27 plant height
84 CQAX28 plant height
85 AQBK012 days to heading
86 CQAA17 relative phosphorus distribution between shoot and root
87 CQAA16 relative phosphorus distribution between shoot and root
88 AQE024 grain yield per plant

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Qu Lianghuan; Wu Chunyan; Zhang Fei; Wu Yangyang; Fang Chuanying; Jin Cheng; Liu Xianqing; Luo Jie; Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification. Journal of experimental botany 2016:67
PMID [27497286]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India